Arabidopsis thaliana (thale cress): AT5G42270
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Entry
AT5G42270 CDS
T00041
Symbol
VAR1
Name
(RefSeq) FtsH extracellular protease family
KO
K03798
cell division protease FtsH [EC:3.4.24.-]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ath01002
]
AT5G42270 (VAR1)
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
ath03110
]
AT5G42270 (VAR1)
Peptidases and inhibitors [BR:
ath01002
]
Metallo peptidases
Family M41: FtsH endopeptidase family
AT5G42270 (VAR1)
Chaperones and folding catalysts [BR:
ath03110
]
Other chaperones and cochaperones
AAA proteases
AT5G42270 (VAR1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M41
AAA
AAA_lid_3
FtsH_ext
AAA_5
AAA_16
TIP49
AAA_22
AAA_2
nSTAND3
AAA_28
RuvB_N
AAA_14
IstB_IS21
Mg_chelatase
AAA_17
AAA_33
LonB_AAA-LID
bpMoxR
AAA_7
Motif
Other DBs
NCBI-GeneID:
834232
NCBI-ProteinID:
NP_568604
TAIR:
AT5G42270
UniProt:
Q9FH02
A0A178U8J6
LinkDB
All DBs
Position
5:16902475..16905294
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AA seq
704 aa
AA seq
DB search
MATTSSNPLLLSSNFLGSQIIISAPTPKTTTKSLPFSVISRKRYQISQSEKLMKSLPSQA
ALAALLFSSSSPQALAVNEPVQPPAPTITAEAQSPNLSTFGQNVLMTAPNPQAQSSDLPD
GTQWRYSEFLNAVKKGKVERVKFSKDGSVLQLTAVDNRRATVIVPNDPDLIDILAMNGVD
ISVSEGEGGNGLFDFIGNLLFPLLAFGGLFYLFRGGQGGAGGPGGLGGPMDFGRSKSKFQ
EVPETGVTFGDVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLA
RAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGA
GMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRP
DVAGRVQILKVHSRGKAIGKDVDYEKVARRTPGFTGADLQNLMNEAAILAARRELKEISK
DEISDALERIIAGPEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQA
GGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRV
ARQMVERFGFSKKIGQVAVGGAGGNPFLGQSMSSQKDYSMATADVVDAEVRELVEKAYVR
AKEIITTQIDILHKLAQLLIEKETVDGEEFMSLFIDGQAELYVS
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccacatcatcaaacccattactactttcttcaaatttcctcggttctcaaatt
ataatctcagctccaacaccaaaaaccaccacaaagtctcttcctttctcagtaatctct
cgaaaaagataccaaatttctcaatcggagaagctaatgaaatcgttaccatcacaagct
gcgttagcagctctgttgttctcatcttcatctccacaagctttagcagttaacgaacca
gttcaaccaccagcaccaaccattactgctgaagctcaatcaccaaatctgtcgactttt
ggtcaaaacgttttgatgacagcaccgaatccacaagctcaatcatcagatcttcctgat
ggaacacaatggcgatacagtgagtttctaaatgctgtgaagaaaggtaaagttgagaga
gtgaagtttagtaaagatggttctgttcttcagttaacagctgttgataatcgtcgtgct
actgttattgttcctaatgatcctgatttgattgatatcttggcgatgaatggtgttgat
atatctgtttctgaaggagaaggtggaaatgggttgtttgatttcattggtaatttgctt
tttcctttgttggcttttggagggttgttttatctctttagaggaggtcaaggaggtgct
ggtggtcctggaggtttaggaggtcctatggatttcggaagatcgaaatcgaagtttcag
gaagtgcctgaaaccggtgtgacatttggtgatgttgctggagctgatcaagctaagctt
gagttacaagaagttgttgatttcttgaagaatcctgataagtatactgcgttaggtgct
aagattcctaaaggttgtttgttggttggtccaccgggtacggggaagacgcttttggct
agagctgtggctggagaagctggagtgccgttcttttcgtgtgctgcttcggagtttgtt
gagctttttgttggtgtgggtgcttctagagttagggatttatttgagaaggcgaaatcg
aaagctccttgtattgtgtttattgatgagattgatgctgttggtagacaaagaggagct
gggatgggtggtggaaatgatgagagggaacagactattaatcagcttttgactgagatg
gatgggttttctggtaactctggtgtcattgtgttggctgccactaatagaccggatgtt
cttgactccgcgttgctgagacctggtagatttgaccggcaagtcacagtggataggcct
gatgtagccggaagagttcagatccttaaggtgcattctagaggaaaagctattgggaag
gatgttgattacgaaaaagttgcgaggagaactccgggtttcactggtgctgatttgcag
aacctgatgaatgaagctgcgattcttgctgctagacgtgagcttaaggagataagcaag
gatgaaatatctgatgctcttgagaggatcattgctggacctgaaaagaagaacgctgtt
gtctctgaggagaagaaaagacttgttgcttaccatgaggctgggcatgctttagttggt
gcacttatgccggagtatgatccagtggccaagatatcgattattccacgtggccaagct
ggtgggctcacctttttcgctcctagcgaagagaggctagagtccggattgtatagcaga
agctaccttgagaaccaaatggctgttgcacttggtggaagggttgcagaagaggtgatc
tttggagacgagaatgtgacaaccggagcatcaaatgatttcatgcaagtgtcgcgggtg
gctcgccaaatggttgagagattcgggttcagcaaaaagattggacaagttgcagttggt
ggagcaggaggaaaccctttcttgggtcaaagtatgtcatcgcagaaggattactcgatg
gcaacagcggatgtggttgatgcggaagtgagagagctcgttgagaaggcgtacgtgaga
gcgaaagagatcataacaacacaaattgatatcctacacaagcttgcacagctccttatt
gagaaagaaactgtggatggagaagagttcatgagtcttttcattgacggacaagccgag
ttatatgtttcttaa
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