Amborella trichopoda: 18446530
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Entry
18446530 CDS
T02990
Name
(RefSeq) replication factor C subunit 3
KO
K10756
replication factor C subunit 3/5
Organism
atr
Amborella trichopoda
Pathway
atr03030
DNA replication
atr03410
Base excision repair
atr03420
Nucleotide excision repair
atr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
18446530
03410 Base excision repair
18446530
03420 Nucleotide excision repair
18446530
03430 Mismatch repair
18446530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atr03032
]
18446530
03036 Chromosome and associated proteins [BR:
atr03036
]
18446530
03400 DNA repair and recombination proteins [BR:
atr03400
]
18446530
DNA replication proteins [BR:
atr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
18446530
DNA Replication Termination Factors
ELG1-RFC complex
18446530
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
18446530
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
18446530
Check point factors
HRAD17(Rad24)-RFC complex
18446530
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
Rad17
DNA_pol3_delta2
AAA_22
AAA_16
AAA_assoc_2
DUF815
AAA_11
AAA_5
AAA_14
RuvB_N
ATPase_2
AAA_24
AAA_18
DNA_pol3_delta
AAA_30
AAA_3
bpMoxR
AAA_7
AAA_19
ResIII
AAA_25
nSTAND3
AAA_2
TniB
Motif
Other DBs
NCBI-GeneID:
18446530
NCBI-ProteinID:
XP_006856708
UniProt:
U5D7G9
LinkDB
All DBs
Position
Unknown
AA seq
398 aa
AA seq
DB search
MEIRRVFARPKIGCIGAHRRCFPFCAHSAIEREREREREMSSPMDVDVEREQDMRYLQTG
KGKVVEREQLLPKATPWVEKYRPQSLADVAAHKDIIDTVDRLTNENRLPHLLLYGPPGTG
KTSTVLAVARKLYGGNLRNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVL
LDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAAHVR
ERLQYVIKAEGLDVDESGLSAVVRLSNGDMRKALNILQSTHMASQHVSEKAVYLCTGNPM
PKDVEQISNWLLNEDFATSYKYISDMKTTKGLALVDIVREVTMFIFMIKMPSTVRVQLIN
DLADIEYRLSFGCNDKLQLGSLIGSFTHVRCAMEAAAK
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggaaataaggcgcgttttcgcgcgtccaaaaatcggatgtatcggggctcaccgtcgc
tgttttcccttttgcgcgcactctgcaatcgagagagagagagagagagagagagagatg
tcatcccccatggacgtggatgtagagagagagcaagatatgaggtatttgcagacggga
aaggggaaggtggttgagagagaacagctcctccccaaggccactccatgggtggagaag
taccgcccacaatccctcgcagatgttgccgcccacaaagacataatcgataccgttgat
aggttaacaaacgagaacaggcttccccatctcctcctctatggccctcctggtactggc
aagacctccactgttttggcagttgctcgaaagctttatggagggaaccttcgcaacatg
attcttgagctcaatgcttctgatgataggggtatcgatgttgttcgccaacaaatacag
gattttgctagcacccagagcttcagctttggtgcaaagtcttctgtgaaactggtcctg
ttggatgaagctgatgccatgacaaaagatgctcaatttgccttgcggagagtgattgag
aaatatacaaagagcacaaggtttgcccttatttgtaaccatgtcaacaaaataattccg
gccttgcagtcaagatgcacccgatttcgatttgctcctcttgatgctgctcatgtcaga
gaacggcttcaatatgtcataaaggctgaggggcttgatgttgatgaaagcggattatct
gcagttgtgaggctaagcaatggagacatgagaaaggctttgaacatattgcagtcgact
catatggcttcccagcatgtgtctgagaaagctgtttacctttgcactggcaacccaatg
ccaaaagatgtcgagcaaatttccaattggcttctaaatgaggactttgcaacttcttac
aaatatatatctgacatgaagactacaaaagggttggcgttggttgacatagtgagagag
gttacaatgtttatttttatgatcaaaatgccatcaactgttcgagttcaacttatcaat
gatttggcagatattgaatacaggctgagctttggatgcaatgataagttgcagcttgga
tcactcataggctctttcactcatgttcgttgtgctatggaggcagctgccaagtga
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