KEGG   Amborella trichopoda: 18446530
Entry
18446530          CDS       T02990                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
atr  Amborella trichopoda
Pathway
atr03030  DNA replication
atr03410  Base excision repair
atr03420  Nucleotide excision repair
atr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    18446530
   03410 Base excision repair
    18446530
   03420 Nucleotide excision repair
    18446530
   03430 Mismatch repair
    18446530
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:atr03032]
    18446530
   03036 Chromosome and associated proteins [BR:atr03036]
    18446530
   03400 DNA repair and recombination proteins [BR:atr03400]
    18446530
DNA replication proteins [BR:atr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    18446530
  DNA Replication Termination Factors
   ELG1-RFC complex
    18446530
Chromosome and associated proteins [BR:atr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    18446530
DNA repair and recombination proteins [BR:atr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     18446530
  Check point factors
   HRAD17(Rad24)-RFC complex
    18446530
SSDB
Motif
Pfam: Rep_fac_C AAA Rad17 DNA_pol3_delta2 AAA_22 AAA_16 AAA_assoc_2 DUF815 AAA_11 AAA_5 AAA_14 RuvB_N ATPase_2 AAA_24 AAA_18 DNA_pol3_delta AAA_30 AAA_3 bpMoxR AAA_7 AAA_19 ResIII AAA_25 nSTAND3 AAA_2 TniB
Other DBs
NCBI-GeneID: 18446530
NCBI-ProteinID: XP_006856708
UniProt: U5D7G9
LinkDB
Position
Unknown
AA seq 398 aa
MEIRRVFARPKIGCIGAHRRCFPFCAHSAIEREREREREMSSPMDVDVEREQDMRYLQTG
KGKVVEREQLLPKATPWVEKYRPQSLADVAAHKDIIDTVDRLTNENRLPHLLLYGPPGTG
KTSTVLAVARKLYGGNLRNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVL
LDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAAHVR
ERLQYVIKAEGLDVDESGLSAVVRLSNGDMRKALNILQSTHMASQHVSEKAVYLCTGNPM
PKDVEQISNWLLNEDFATSYKYISDMKTTKGLALVDIVREVTMFIFMIKMPSTVRVQLIN
DLADIEYRLSFGCNDKLQLGSLIGSFTHVRCAMEAAAK
NT seq 1197 nt   +upstreamnt  +downstreamnt
atggaaataaggcgcgttttcgcgcgtccaaaaatcggatgtatcggggctcaccgtcgc
tgttttcccttttgcgcgcactctgcaatcgagagagagagagagagagagagagagatg
tcatcccccatggacgtggatgtagagagagagcaagatatgaggtatttgcagacggga
aaggggaaggtggttgagagagaacagctcctccccaaggccactccatgggtggagaag
taccgcccacaatccctcgcagatgttgccgcccacaaagacataatcgataccgttgat
aggttaacaaacgagaacaggcttccccatctcctcctctatggccctcctggtactggc
aagacctccactgttttggcagttgctcgaaagctttatggagggaaccttcgcaacatg
attcttgagctcaatgcttctgatgataggggtatcgatgttgttcgccaacaaatacag
gattttgctagcacccagagcttcagctttggtgcaaagtcttctgtgaaactggtcctg
ttggatgaagctgatgccatgacaaaagatgctcaatttgccttgcggagagtgattgag
aaatatacaaagagcacaaggtttgcccttatttgtaaccatgtcaacaaaataattccg
gccttgcagtcaagatgcacccgatttcgatttgctcctcttgatgctgctcatgtcaga
gaacggcttcaatatgtcataaaggctgaggggcttgatgttgatgaaagcggattatct
gcagttgtgaggctaagcaatggagacatgagaaaggctttgaacatattgcagtcgact
catatggcttcccagcatgtgtctgagaaagctgtttacctttgcactggcaacccaatg
ccaaaagatgtcgagcaaatttccaattggcttctaaatgaggactttgcaacttcttac
aaatatatatctgacatgaagactacaaaagggttggcgttggttgacatagtgagagag
gttacaatgtttatttttatgatcaaaatgccatcaactgttcgagttcaacttatcaat
gatttggcagatattgaatacaggctgagctttggatgcaatgataagttgcagcttgga
tcactcataggctctttcactcatgttcgttgtgctatggaggcagctgccaagtga

DBGET integrated database retrieval system