Aureimonas sp. SA4125: Sa4125_04490
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Entry
Sa4125_04490 CDS
T08429
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
auz
Aureimonas sp. SA4125
Brite
KEGG Orthology (KO) [BR:
auz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Sa4125_04490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
auz03400
]
Sa4125_04490
Enzymes [BR:
auz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Sa4125_04490
DNA repair and recombination proteins [BR:
auz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Sa4125_04490
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BDA82907
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Position
complement(487511..490234)
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AA seq
907 aa
AA seq
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MASSADALLEKYRAKRDFATTAEPSGAETARKGEGLAFVVQKHDATRLHYDFRVEWEGVL
KSWAVTRGPSLNPADKRLAVRTEDHPLDYGDFEGTIPAGEYGGGTVMLWDTGTWEPEGDA
EAGFRDGNLKMHLHGTKMNGRWVLVRMKPRAKEKTENWLLIKEKDDAVDTEADLLKKDRS
AKTDRSMDEIADGNVEWARKTVSPTAKGAKDAKTKKSPKALEAKASAPKAERPSPTEAGE
KPAKAGASTKRAGSPPDFQALQLATLVDSVPAGAGWLHEMKHDGYRVLIALGGGEAVLYT
RSALDWTERFGSVLPSVTALDCDSALIDGEIVAFDADGGTDFSTLQQKLKAGEDLSCFCF
DLLMLDGEDLRDAPLIQRKKLLKALLDGHEDAVLLYSEHIEGNGPAMFKEVCAAGHEGIV
SKRADAPYSGGRQKSWLKVKCTRRQEFVIGGFSPSDKAGRAFSSILVGVHEDGEFKYRGR
VGSGFGDEALADLKARFDTLASRSSPFADLPRPIARTSKFVTPELVAEVDFAELTADGQI
RHGVFKGLREDKPAEEIVDEKPVAAPAAKAGKGKASTANKPAPAGRAAPAPAEDTTAEAP
PRRRVSRADRKDATVAGVKISHPERVVYEDGGVTKLALAEYYEAVAERMLVHAGSRPLSL
VRCPDGPKKQCFFQKHDSGGFSAAIRKVAIAEKDGGTADYLYVDDAAGLVAAVQMNALEF
HIWGAHSDDVEKPDRVVFDLDPDESLTFADVKRAALDMRDMLAELGLRTFPMITGGKGVH
VVAPLDRRQDWPAVKTFARDVAERLAREEPKRFVATMSKAKRSGKIFIDWLRNERGATAI
APYSTRARDGAPVAVPVSWDELDGLEAANLFRLDEVVARLEKPDPWADYGAVRQSLTKTL
LKKLAGT
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggcctcatccgccgacgctttgctcgaaaaatatcgcgccaagcgcgactttgcgacg
accgcggagccgtcgggagcggagacggcgcgcaagggcgaaggtcttgcctttgtcgtc
cagaagcacgatgcgacgcggctccactacgattttcgcgtcgagtgggaaggcgtcctg
aaaagctgggcggtcaccagggggccgagcctcaatccggcggacaagcggcttgccgtg
cgcaccgaggaccatcccctcgactatggcgacttcgaagggaccatccccgccggcgaa
tacggcggcggcaccgtcatgctgtgggacaccggcacctgggagcccgagggagacgcc
gaggccgggtttcgcgacggcaatctcaagatgcatctccacggcaccaagatgaacggt
cgatgggtgctggtgcggatgaagccgcgggccaaggaaaagaccgagaactggcttctc
atcaaggaaaaggacgacgccgtcgacaccgaggcggaccttctgaagaaggaccggagt
gccaagacggaccgctcgatggacgagatcgcggacggaaacgtggagtgggcccgcaag
acggtgtcacccacggcgaagggcgccaaagacgcgaagaccaagaagtcccccaaggct
ctcgaagcgaaggcttcggccccaaaggcggagaggccgtcgccgacggaagcgggagaa
aagccggccaaggccggcgcatcgaccaagcgtgcgggatcgccgcccgattttcaggcg
ctgcagctcgccaccctcgtcgacagcgtgccggcaggggccggctggctgcacgagatg
aagcatgacggctaccgtgttctcatcgccctcgggggtggcgaagctgtcctctatacg
cgcagcgcgctcgactggaccgagcgcttcggctccgtcctaccttccgtgacggcgctc
gactgcgacagcgccctgatcgacggggagatcgtggccttcgatgcggacggcggtacg
gacttctcgacactccagcaaaagctgaaagccggagaggacctctcctgcttctgtttc
gatctgctgatgctcgacggcgaggatcttcgggacgcccccctgatccagcgcaagaaa
ctcctgaaggcgctgctcgacgggcatgaggacgcggtgctcctctattccgagcacatc
gagggaaatggtccggcgatgttcaaagaagtctgtgcagccggacacgagggcatcgtc
tccaagcgcgccgacgcgccctatagcggcggtcggcagaagagctggctgaaggtgaag
tgcacgcgcaggcaggaattcgtcatcggcggcttctccccgtcggacaaggcaggacgg
gcgttttcctcgattctcgtcggcgtgcacgaggacggcgagttcaagtaccgcggccgt
gtcggctccggcttcggcgatgaggcgctcgccgacctcaaggcacgcttcgacacgctc
gcgtccagatcttcgccgtttgcggatctgccgcggccgatcgcccggacatcgaaattc
gtcacgcccgagctcgtcgccgaagtcgacttcgccgaactgacggcggacggccagatc
cgtcatggcgtcttcaagggtctgcgagaggacaagccggccgaggagatcgtcgacgaa
aagccggttgctgccccggcagccaaggcggggaaaggcaaggcgagcactgcgaacaag
ccggcgccagccggacgagcagcgccggccccggccgaggacaccactgccgaggcgccg
ccccgcaggcgggtctcgcgggccgaccgcaaggatgccaccgttgccggcgtgaagatc
tcgcatccggaacgggtggtgtacgaagacggcggcgtgacgaaactcgctcttgccgaa
tactacgaggccgttgccgaacgcatgctggttcatgccgggagccgcccgctgtcgctc
gtgcggtgtccggacgggccgaagaagcagtgctttttccagaagcacgattccggcggg
ttttccgccgcgatccgcaaggttgcgattgccgagaaagacggcggcacggccgactat
ctctacgtcgacgacgccgcggggctcgtggccgccgtccagatgaacgcgctggagttt
cacatctggggcgcccacagcgacgacgtggaaaagcccgaccgggtcgtgttcgacctc
gaccccgacgagagcctcacctttgccgacgtgaagcgcgccgcgctcgacatgcgcgac
atgctggcggaactgggcctcaggacctttccgatgatcaccggtggcaagggcgtccac
gtcgtcgcgcccctcgatcggcggcaggactggccggcggtgaaaacgtttgcccgcgac
gtcgcggagcggttggcgcgcgaggaaccgaaacgcttcgtggcgacgatgtcgaaggcc
aagcgcagcggcaagatcttcatcgactggctgcgcaacgagcggggcgcaaccgcgatc
gccccctactccacccgtgcgcgcgacggcgcgcccgttgccgtccccgtcagctgggac
gagctggacggtctcgaggcggcgaacctctttcgcctcgatgaggtcgttgcccggctc
gagaagccggacccttgggcggattatggcgcggtgcgccagtcgctgaccaagacgctg
ctgaagaagctcgccggtacatag
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