Trichormus variabilis: Ava_4218
Help
Entry
Ava_4218 CDS
T00277
Name
(GenBank) sporulation protein SpoIID-like protein
KO
K06381
stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:
4.2.2.29
]
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ava01011
]
Ava_4218
Enzymes [BR:
ava01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
Ava_4218
Peptidoglycan biosynthesis and degradation proteins [BR:
ava01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
Ava_4218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoIID
Motif
Other DBs
NCBI-ProteinID:
ABA23817
CyanoBase:
Ava_4218
UniProt:
Q3M5B9
LinkDB
All DBs
Position
5288712..5289866
Genome browser
AA seq
384 aa
AA seq
DB search
MISMKFQLLLGSLLSQIKVRHWWLGILLWIALVAPAQASVILRVAIERGVNQARVGSSTT
AIVKDSTGRTLGQLPAMSSFYAQAVPGGVALDKWQSGLFWIEPSGKGFVYIGDRWFRGRT
LVVPTEKGIDVVNWVDLEEYLYSVVGGEMNSSWPGEALKAQAIAARTYALYKREQQRSNP
VYDLGDTPDRWQIYKGVSSESPSTYAAVDATAGQVLTYNNNLILSVFHACSGGHTENVED
VWSNPLPYLRAVQDYDQNIKECNWQRTFTPTEISSRISGVGNIREVVAESFSPFRSVKAL
RVVGDKGTKVLRGEEVRTALKLRSTRFNVTRGADGSFTLQGAGFGHGLGMSQWGAYNLAL
RGANHLQILGHYYQGVALTPIKAK
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcatgaaatttcaactgttgttaggctctttactttcccagattaaagtccgt
cattggtggctaggtatcttattgtggatcgctttggttgccccagcgcaagcctctgtc
atcttgcgcgtggccattgagcggggagtcaatcaagctagagttggcagttccacaacg
gcaattgtcaaagatagtacagggcgtactttgggacaattgccagcgatgagttccttt
tatgcccaagctgtgcctgggggagtggctttagataaatggcagtctggcttattttgg
attgaaccctcagggaaaggattcgtttatataggcgatcgctggtttcgtggtagaact
ttggttgtacccacagaaaaaggtatagatgtggttaactgggtagatttagaagaatat
ctctacagcgttgttggtggagaaatgaattctagctggccgggagaagccttaaaagct
caggcgatcgccgcccgtacctatgccctatacaagcgagaacaacagcgtagtaacccg
gtttatgatttaggtgataccccagatcgctggcaaatttataaaggagtcagcagtgaa
tctccttcaacctatgccgccgttgatgctacagctgggcaagtattaacttataacaat
aatctcattctttcagttttccacgcttgttctggtggacacacggaaaatgtggaagat
gtttggagtaatccccttccttatctacgcgctgttcaagactacgaccaaaacattaaa
gaatgtaattggcaaagaacttttaccccaacagaaattagctccagaatttctggtgta
ggcaatatcagggaagtagttgccgaatccttttcaccgttccgtagtgtcaaagcttta
agagtcgtgggtgataaaggtacaaaagtcctgcgaggcgaagaagtgcgtactgccctg
aaactcagaagtactcgctttaacgtcaccagaggcgcagatggtagctttaccctccaa
ggcgcaggttttggtcatggtttaggtatgagccaatggggtgcttataatttagcttta
cgcggcgctaaccacctgcaaatactaggacattactatcagggtgtcgccctcacaccc
attaaggcgaagtga
DBGET
integrated database retrieval system
