Trichormus variabilis: Ava_B0053
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Entry
Ava_B0053 CDS
T00277
Name
(GenBank) Sigma-28
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ava03021
]
Ava_B0053
Transcription machinery [BR:
ava03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Ava_B0053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
HTH_24
HTH_28
HTH_IclR
LexA_DNA_bind
DUF2316
KORA
FRB_dom
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
ABA24767
CyanoBase:
Ava_B0053
UniProt:
Q3M2L9
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All DBs
Position
A:65809..66759
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AA seq
316 aa
AA seq
DB search
MSSLSSDLIRIYLQEIGQFPLLTSDQEITYGRQVQQMIAIQEQQQQLSQQLHREPTTAEL
ANFLNTTQAQVNQILELGQRAKQKMITANLRLVVSIAKKYQRRNLEFLDLVQEGAIGLQR
GIEKFDPNRGYKLSTYAYWWVTQAITRAIAEKSRTVRLPIHVNEKLNQIKKVQREFFQTL
GRRPSVAEIAQKLELEPSQIREYLKVASGTISLDLKVGDNQETELSELLASEGVSPNENT
THEMLRQDLSDLLASLKPMQREVLILRFGLLDNQEQSLAQISEKLNLSRERVRQIQQKAM
TALRRQQPSIGQYLTS
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcctaagttctgatttgatacgcatctatttgcaagaaattggtcagtttcct
ttgttaacttctgatcaggaaataacttatggcaggcaagtacagcaaatgattgccatc
caagagcaacagcagcagcttagtcaacaattacatcgagaaccaacaacggcagaatta
gcgaatttcctcaacacaacccaagcccaagtcaatcaaatacttgagcttggtcaacga
gccaagcaaaagatgatcaccgcaaatttgaggctggtagtttctatcgccaaaaaatat
cagcgccgtaacttagagttcttagatttagttcaagaaggtgcgattggcttgcaaagg
gggatagaaaagtttgaccctaatcgtggttacaagttgtcaacctacgcatattggtgg
gtaacgcaagcaattaccagagcgatcgccgaaaaatctcgcacagtcaggctaccgatt
cacgttaacgaaaaactcaatcaaattaagaaggtacagcgagaattttttcaaacgcta
ggtcgccgtcctagtgtggcagaaattgcccaaaaattagagttagaacccagccaaatt
cgagaatacctcaaggttgccagtgggacgatttctctagatttaaaggtaggggataac
caggaaacagaattgagcgaacttttagcctcggagggtgtttcgccaaatgaaaatact
actcacgaaatgttgcgccaagacctaagtgatttgttagcatcactcaaaccgatgcaa
cgcgaagtattaattttacgctttggtttgttggataatcaagagcaaagtttagcccaa
attagcgaaaagctaaatcttagccgagagcgagtgcgccaaatccagcaaaaagcaatg
actgctctgcgtcgtcaacagccatcgattgggcagtatctcacttcttga
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