Trichormus variabilis: Ava_C0075
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Entry
Ava_C0075 CDS
T00277
Name
(GenBank) DNA polymerase III, beta chain
KO
K02338
DNA polymerase III subunit beta [EC:
2.7.7.7
]
Organism
ava
Trichormus variabilis
Pathway
ava03030
DNA replication
ava03430
Mismatch repair
ava03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ava_C0075
03430 Mismatch repair
Ava_C0075
03440 Homologous recombination
Ava_C0075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ava03032
]
Ava_C0075
03400 DNA repair and recombination proteins [BR:
ava03400
]
Ava_C0075
Enzymes [BR:
ava01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Ava_C0075
DNA replication proteins [BR:
ava03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Ava_C0075
DNA repair and recombination proteins [BR:
ava03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Ava_C0075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_beta_2
DNA_pol3_beta
DNA_pol3_beta_3
Motif
Other DBs
NCBI-ProteinID:
ABA25164
CyanoBase:
Ava_C0075
UniProt:
Q3M1H9
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All DBs
Position
C:103851..105185
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AA seq
444 aa
AA seq
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MKLNIEQSKLAEILETAYLAISPKPTDPILGNILLIANEDGIVSATGTNLNLTIHTTTTA
NVETSGQVALPAKLLTDTINNVRGEISLEVENQACIITHNSGKCRLIGGKPDEFPTLPKG
ENPIEVNLSAKKLQTALEGTLYCTNGDETKLVLTGVNFKIDTNKWQAASTNGHKLALVTG
TLDSEYSDPIDFTVPGKSLGELNKILSQSADTSVCNILLSNKTIEFSLPNTKVISRLLEG
EYPKINSLIPRTFEYEFTLERKGFESALKRVSYLAERKQKVVKILWELEATQATLYTEAT
DIGDAVDSVLMKPTTSHSENISIGLNIDYLLEGLKHISTDEIVVRCNKPTQPVIICPMGG
LLNQLYLVMPVEIKQGFEKVNNQSTKTEASTQPEPSTEEVTDIAQATDDSENSETEIPSL
VAKDTTKGKSTSRSSRTKKEAATA
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaaactaaacattgaacaatctaaactcgcagaaattctagaaactgcttatcttgca
attagtcctaagcctactgacccaattttaggaaatatcttactgatagcaaatgaagat
gggatagtatcagcaacaggaacaaaccttaacctcacaattcatactacaacgaccgct
aatgtagaaacgtcaggtcaggtagcactaccagccaaactattaactgacactattaac
aatgtcagaggagaaatttccttagaggtagaaaaccaagcctgcataattactcacaat
agcggtaaatgccgtctgattggcggaaaacctgacgaatttccaactcttcccaaggga
gaaaatccaatagaagtaaatttaagtgccaagaaactccaaactgcacttgaagggaca
ctgtattgcaccaatggtgacgaaacaaagttagttttaactggtgtcaacttcaaaatt
gataccaataagtggcaagctgctagtacaaatggtcacaaattagcactagtcacagga
acacttgatagcgaatattctgatccaattgactttactgttccaggtaagtcacttggc
gagttaaacaaaattctctctcaaagtgccgatacaagcgtgtgcaatattcttctatca
aataaaactattgagtttagtcttcctaatacaaaggtcatttcccgacttttagaggga
gaatatcccaaaatcaatagcttgattcccagaacatttgagtatgaatttacattagaa
cgcaagggatttgagagcgcactgaagcgagtaagttatctagctgaacgcaagcaaaag
gttgtcaaaattctctgggaattggaagctacacaggcaacactatacaccgaagctact
gatatcggggatgcagttgactcggtactgatgaaaccaacaactagtcattcagaaaac
atcagtattggattaaatatcgactaccttctcgaaggattaaagcacatcagtactgac
gaaatcgtggtgcggtgtaacaaacccacgcaaccagtcattatctgcccaatgggagga
ctgctcaatcagttgtatctggtcatgcctgtagaaattaagcaggggtttgaaaaggta
aataaccaaagtacaaagacagaagccagcactcaacctgagcctagcactgaagaagta
acagatatagcacaggcaacagatgatagtgaaaattctgaaacagaaataccatcttta
gtagcaaaagatactactaaaggcaagtcaacctcacgctcgtcacgaacgaaaaaagaa
gccgcgactgcttaa
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