Agrobacterium vitis VAR03-1: RvVAR031_27070
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Entry
RvVAR031_27070 CDS
T08810
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RvVAR031_27070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avf03019
]
RvVAR031_27070
Enzymes [BR:
avf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RvVAR031_27070
Messenger RNA biogenesis [BR:
avf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RvVAR031_27070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
HEM4
CMS1
Motif
Other DBs
NCBI-ProteinID:
BCH55097
UniProt:
A0A6S6MUQ7
LinkDB
All DBs
Position
1:2958720..2960126
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AA seq
468 aa
AA seq
DB search
MTSFNELGLSPTVVATLTQLGFETPTPIQAQGIPVVMAGRDLIGLAQTGTGKTAAFGLPI
IELLMKDERRPDNRTTRTLILAPTRELVNQIGDNLRSFIRKTPIKINQVVGGASINKQQL
QLERGTDILVATPGRLLDLISRNAISLRAVTHLVLDEADQMLDLGFIHDLRKIAKMVPAK
RQTLLFSATMPKAIADLAGSFLNNPVTVEVSPPGKAADKVEQYVHFVNGQNHKTELLKKT
LADHPDGRSIVFLRTKHGAEKLMKHLEITGFSVASIHGNKSQGQRERALKGFRDGSIRTL
IATDVAARGIDIPAVSHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCGPDEARLLRD
IERLMGIEISVASGEAPADRGRPARPTRRAGGGGAGAGAGNRNHGNPARKDGRPQGRGPR
EEGDGGEQRSARPANRNKPANGRPARRPDRPRQDGPARAGAGGQRRER
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagttttaacgaacttggcctctcgccgactgttgtcgccacgctaacccagctt
ggcttcgagacccctacccccatccaggcacagggcattcccgttgtcatggctggccgg
gacctgattggccttgcccagaccggcaccggcaagaccgcggcctttggcctgccgatc
attgagttgctgatgaaggacgaacgccgtcccgacaatcgcaccacccgcacgctgatt
cttgccccgacccgcgaactcgtcaaccagatcggcgataatctgcggtccttcattcgc
aagaccccgatcaagatcaaccaggtggttggtggcgcatcgatcaacaagcagcagctt
cagctggaacgtggcaccgacattctggtcgccaccccgggccggttgctggacctgatt
tcccgcaatgcgatttcgctgcgcgccgtcacccatctggtgctggacgaagccgaccag
atgctcgatctgggcttcatccacgatctgcgcaagatcgccaagatggttccggccaag
cgccagaccctgctgttttcggccaccatgccgaaggcgattgccgatctggccggtagt
ttcctcaacaatccggtcaccgtcgaggtgtcgcctccgggcaaggccgccgacaaggtc
gaacagtatgttcacttcgtcaacggccagaaccacaagaccgaactgctgaagaagacc
cttgccgatcatcccgatggccgctccatcgttttcctgcgcaccaagcatggcgctgaa
aagctgatgaagcatctggaaatcaccggcttctcggttgcttccattcatggcaacaag
agccagggccagcgcgagcgcgccttgaagggtttccgcgatggctcgatccgcacgctg
atcgccaccgacgttgccgcacgcggtatcgacatcccggctgtcagccatgtgttcaac
tatgacctgccggaagtgccggacgcctatgtccaccgcatcggtcgtacggcccgcgct
ggccgcgacggcattgccatcgccttctgcggtcccgatgaagcccgcctgctgcgcgac
atcgagcggctgatgggtattgaaatttccgttgccagcggcgaagctccggctgaccgt
ggccgccctgcccgtccgacccgtcgtgctggtggcggtggtgcaggcgccggtgctggc
aatcgcaaccatggcaacccggcccgcaaggatggccgtccgcaaggccgtggtccacgc
gaagaaggcgatggtggcgaacagcgttcggcccgcccggccaaccgcaacaagccagcc
aacggtcgcccggcccgccgcccagaccgtccgcgtcaggacggcccggcccgcgccggt
gcaggcggccagcgccgcgagcgttaa
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