Acinetobacter vivianii: LF296_15160
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Entry
LF296_15160 CDS
T09059
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aviv
Acinetobacter vivianii
Brite
KEGG Orthology (KO) [BR:
aviv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aviv03016
]
LF296_15160
Enzymes [BR:
aviv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LF296_15160
Transfer RNA biogenesis [BR:
aviv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LF296_15160
Prokaryotic type
tRNA splicing ligases
LF296_15160
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
WDZ50634
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All DBs
Position
3237101..3238306
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AA seq
401 aa
AA seq
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MGIQKILNSDAEYGVPVKIFTNDIDSESIEQLKKMAQLQFVYSHIAVMPDVHVGKGATVG
SVIPTKNAIIPAAVGVDIGCGMNAIRLNLKASQLPDNLTPLRHAIERKVPVGFELHKQVK
AKASTIIPLEKRLQPIINKHPGLVRMLRKFDATWQKQLGTLGGGNHFIELCLDENQDVWV
MLHSGSRGLGNVIGTYFIELAKKEAQHRFGHVPDKDLSYFAEGSNSFNDYVEAVEWAQEY
AFENRREMMRLILEAIRPLLPPFQMTKEAINCHHNYVSQENHYGEDLLITRKGAIRAGLD
ELGIIPGSMGARSFIVRGKANPESFCSCSHGAGRKMSRSKAKLLFSQDDLIQQTQGIECR
KDSGVIDEIPGAYKDIDQVMANQSDLIEIVHILKQILCIKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgggcatacaaaaaatactcaattctgatgctgaatatggcgttccagtgaaaatcttc
acgaacgatattgatagcgaaagtattgaacaattgaaaaaaatggcacaactgcaattt
gtttattcacatattgccgtgatgcctgatgtacatgtgggcaaaggtgccactgtaggt
agtgtaatccccactaaaaatgcaatcatccctgccgctgtcggtgtggatattggttgt
ggtatgaatgcgatacggctcaatttaaaagcctcacagcttccagacaatctcacacca
ctacgtcatgcgatcgaacgtaaagtccccgtaggctttgaattacataagcaggttaaa
gcaaaagcttcgactattattccacttgaaaaacgcttacaacccatcattaataaacat
ccgggccttgttcgcatgctcaggaaatttgatgcaacttggcaaaaacagctcggtacc
ttaggaggtggtaatcactttattgagctctgccttgatgaaaatcaggatgtctgggta
atgctacattcaggcagccgtggtttaggcaatgtgattggcacctatttcatcgaactt
gccaagaaagaggctcaacatcgatttggacatgtaccagataaagatttgagctatttt
gcggaaggttcaaatagctttaatgattatgtggaagcagttgagtgggcacaagaatat
gcttttgaaaatagacgtgaaatgatgcgtctgattctagaagcaattcgtccactgcta
ccgcccttccagatgaccaaagaagcaattaactgccatcacaactatgtcagccaagaa
aaccattatggggaagacttgctgattacgcgcaaaggtgccattcgtgctggcctagat
gaattaggtattatccccggctccatgggtgcacgttcctttatcgttagaggtaaggcc
aatcccgaatccttctgctcatgttcacatggcgcaggacgaaagatgagtcgcagcaaa
gcaaaactacttttcagccaagatgatttgattcagcaaacgcaaggtatcgaatgccga
aaagacagtggcgttattgatgaaattccaggtgcatataaagacattgatcaagttatg
gcaaaccaatcagatttgatcgaaattgtgcacatactcaagcaaattttatgcattaaa
ggttaa
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