Agrobacterium vaccinii: HRR99_11545
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Entry
HRR99_11545 CDS
T08171
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
avq
Agrobacterium vaccinii
Brite
KEGG Orthology (KO) [BR:
avq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avq03021
]
HRR99_11545 (rpoH)
Transcription machinery [BR:
avq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HRR99_11545 (rpoH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_11
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
UHS62109
LinkDB
All DBs
Position
circular:complement(2338903..2339805)
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AA seq
300 aa
AA seq
DB search
MARNSLPSITAGEAGLNRYLDEIRKFPMLEPQEEYMLGKRYAEHGDRDAAHRLVTSHLRL
VAKIAMGYRGYGLPIGEVVSEGNVGLMQAVKKFDPERGFRLATYAMWWIKASIQEYILRS
WSLVKMGTTANQKRLFFNLRRLKGKIQAIDDGDLKPEHVTEIATKLQVSEEEVISMNRRL
HGDASLNAPIKAAEGEAGQWQDWLVDDHDSQETVLIEQDELDTRRRMLAKAMGVLNERER
RIFEARRLSEDPVTLEDLSTEFDISRERVRQIEVRAFEKVQEAVQKEALEAAKALRVVDA
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcaatagtttgccttccattaccgccggtgaagccggtcttaatcgatatctc
gatgaaatccgcaagttcccgatgctggagccgcaggaagaatacatgcttggcaaacgt
tatgccgaacatggtgaccgcgatgcagcacacaggcttgtgacgagtcacctgcgtctc
gtggcgaagatcgccatgggctaccgcggctatggcctgccgattggcgaagtggtttcc
gaaggcaatgtgggcctgatgcaggcggtcaagaaattcgaccccgagcgcggctttcgt
ctggcgacctatgccatgtggtggatcaaggcgtccattcaagaatacattctgcgctca
tggtcgttggtgaagatgggcacgacggccaatcagaagcgcctcttcttcaacctgcgt
cgcctcaagggcaagatacaagctatcgacgacggcgatctgaagccggagcatgtaacc
gaaatcgcgaccaagcttcaggtgtcggaagaagaggtcatttcgatgaaccgccgcctg
cacggcgacgcatcgctcaacgcgccgatcaaggctgcggaaggcgaagcgggccaatgg
caggactggttggtcgatgaccacgacagtcaggaaaccgtgctgatcgagcaggacgaa
ctcgatacgcgtagacgcatgctggcgaaggccatgggcgtgttgaacgagcgcgaacgc
cgaattttcgaggcgcgccgcctgtcggaagatcctgttacgctggaagacctgtctacc
gagttcgatatcagccgcgagcgcgtgcgccagatcgaagtacgcgctttcgaaaaggtt
caggaagctgtccagaaggaagcgctggaggcggccaaggctctgcgtgtcgtcgacgct
taa
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