Aerococcus viridans: AWM76_01455
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Entry
AWM76_01455 CDS
T04270
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
avs
Aerococcus viridans
Pathway
avs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWM76_01455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avs03021
]
AWM76_01455
03019 Messenger RNA biogenesis [BR:
avs03019
]
AWM76_01455
Transcription machinery [BR:
avs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AWM76_01455
Messenger RNA biogenesis [BR:
avs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AWM76_01455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
AAA_22
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
AMC00334
LinkDB
All DBs
Position
313248..314543
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AA seq
431 aa
AA seq
DB search
MSDNEQEHVKLHSLQAMTLKEIYQYAKAYKVPYYSQMNKKELIMAVLRAQEVSQGFMNVE
GVLDITGSDFGFLRSINYSPSQEDIYISNSQIRRFGLRNGDLVSGTARPPKASERYLGLM
HVYAVNGKDPDEAKERAHFPALTPVYPDEQLRLESTPGRLSARMIDLISPVGYGQRGLIV
APPKAGKTVLMKEIANGITANNPDVELIMLLIDERPEEVTDLERSIDGEVVSSTFDQRPE
NHVRIAELVLERARRLVEDKRDVVILMDSITRLARAYNLVEKPSGRTLSGGIDPAAFYKP
KKFFGSARNIEDGGSLTILATALVDTGSRMDDMIYEEFKGTGNAEIHLSRDLAESRVFPA
IDIRRSSTRKEELLHDESALKVLWKLRQTMKGDMLVYTNEMLKEMKKTETNEQFIDRLDV
FLSKGKNKGKS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataatgagcaagaacacgtgaagttgcatagtttgcaggctatgactttgaag
gagatttaccagtatgcgaaggcgtataaggtcccttattatagccaaatgaataagaaa
gagctgattatggctgtcttgcgggcgcaagaggtgagtcagggctttatgaatgtcgag
ggtgtgcttgatattacagggtctgattttggtttcttgcggtctattaattattcgcct
agtcaggaggatatttatatttcgaattctcagattcgccggtttggtttgcggaatggg
gatttggtgtcaggtacagctcgtccgcctaaggcttctgagcggtacttgggcttgatg
catgtgtatgcggtgaatggtaaggacccagatgaggcgaaggaacgggcgcatttccca
gccttgacccctgtttatccggatgagcaattacggttggagtcgacgcctggacgtttg
tctgcgcggatgatagatttgatttcgcctgttggttacggtcaacgtggtttgattgtg
gcacctcctaaggctggtaagacggtcttgatgaaggaaatcgccaacggaattacagct
aataatccggatgttgagttgattatgctgttaattgatgagcgtcctgaagaggtgacg
gatttagagcgatcaattgatggggaagtggtttcgtctacttttgatcaacgacctgaa
aaccatgtgcggattgcggaattggttttagaacgggcgcgtcgtttggtggaagataag
cgtgatgtggttattttgatggattcaattacgcgtttagcccgtgcttacaacttggtt
gagaagccgagtggccggactttatctggtggtattgatccagctgcattctataagccg
aagaaattctttgggtcagcccgtaatattgaagatgggggctccttgactattttagcg
acagctttagtagatactggttctcgtatggacgatatgatttacgaggagttcaagggt
acgggtaatgcggagattcacttatctcgtgacttggcagaatctcgtgtcttcccagcg
attgatattcgtcgttcatctactcgtaaggaagagttgttgcatgatgagtcggccttg
aaagttttatggaaattgcgccagacgatgaagggcgatatgttggtttataccaatgaa
atgctgaaggaaatgaagaaaactgaaaccaatgaacagtttattgaccggcttgatgtc
tttttatccaaaggaaaaaacaagggtaaatcataa
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