Anabaena sp. WA102: AA650_09290
Help
Entry
AA650_09290 CDS
T04059
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
awa
Anabaena sp. WA102
Pathway
awa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
awa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AA650_09290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
awa03400
]
AA650_09290
Enzymes [BR:
awa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AA650_09290
DNA repair and recombination proteins [BR:
awa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AA650_09290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
PsbQ
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALB40641
UniProt:
A0A0K2LYD3
LinkDB
All DBs
Position
2078064..2081537
Genome browser
AA seq
1157 aa
AA seq
DB search
MSFSSIVRALARSPLTAELITKLNKQQELRLNGISRLPKGLVASALANYEDQDLCVVCAT
LEEAGRVFAQMEAMGWKTVHFYPTSEASPYEPFDPENELSWGQMQVLADLVNGRSSVVSG
QLPKQRTAIIATVGALQPHLPPPDAFKSFCVTLEKGMEFDLDGFGEKITILGYERVPLVE
TEGQWSRRGDIVDVFPVSSELPVRLEWFGDEIEQIREFDPATQRSALDKVEKVTLTPTSF
APIINTALTENVETFHEPSLQELGTLEGSRRFLGLAFAKPASLLDYLAENTLVAIDEPEQ
CYAHSDRWVENANSQWSVVSGQLSVGLPKIHRNFDECIGEISNFRKLYLSELSEENNGLN
LASRPLPVTPHQFAKLGETIRNERERNFAVWIISAQPSRSVSLLQEHDCPAQFIPNPRDY
QAIDKLQINHIPIALKYSGLAELEGFILPSFRLVIVTDREFYGQHSLANFGYVRKRRQAT
SKQVDPNKLRQGDYVVHRSHGIGKFVKLESLTINDETRDYLVVQYADGLLRVAADQVSSL
SRFRTSGDKAPELHKMTGKAWENTKNKVRKAIKKLAVDLLKLYAARSQQQGFSYPADMPW
QEEMEDSFPYQPTTDQLKAVQDVKRDMESERPMDRLVCGDVGFGKTEVAIRAIFKAVTAG
KQVALLAPTTILTQQHYHTIKERFAPYPVNVGLLNRFRSAEEKRNIQKRLATGELDIVVG
THQLLGKGVQFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSG
IREMSLITTPPPTRRPIQTHLAPLNSDIVRSAIRQELDRGGQVFYVVPRVEGIEETTTKL
REMVPGGRFAIAHGQMDESELESTMLTFGNNDADILVCTTIIESGLDIPRVNTILIEDAH
RFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQLAMRD
MEIRGVGNLLGAEQSGQMDVIGFDLYMEMLEEAIREIRGQEIPKVEDTQIDLNLTAFIPA
TYIPDLDQKMSAYRAVATVKSKYELKQIAAEWTDRYGTIPVPASQLLRVMELKQLAKNLG
FSRIKPENKQHIVLETPMEEPAWNLLAENLTPTMKARFVYSPGKVTARGLGVFKADQQLQ
TLIDTFVKMQGAISETA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtccttctcttctattgtgcgtgctttggcgcgatcgcctcttaccgcagaactcatt
actaaactcaacaagcaacaggaattgcggttaaatgggatttctcggctacccaaagga
ctggtagcttcagcattagcaaattatgaagatcaggatttatgtgtggtctgtgccact
ttagaggaagctgggcgggtttttgcccaaatggaagcaatgggatggaaaactgtccac
ttttaccccacttccgaagcttctccctatgaaccctttgaccctgaaaatgagttgagt
tggggtcaaatgcaggtgttagctgatttggtcaatggtcggtcgtcagttgtcagtggt
cagttgccaaaacaaagaactgccataattgctactgtgggggcgttgcagccgcatttg
ccaccaccggatgcgtttaaatcattttgtgtcaccttagaaaaagggatggaatttgat
ttagacgggtttggggaaaaaatcacgattttgggatatgaacgagttcccctagtggaa
actgaaggacaatggagtagacggggagatattgtggatgtgtttccggtgtcctccgag
ttgcctgtgcgcttggaatggtttggcgacgaaattgaacaaattcgggaatttgacccg
gctacccagcgttctgccttggataaggtggaaaaagttacccttacccctacaagtttt
gcaccgattatcaacacagcacttacagaaaatgtagagacgtttcatgaaccgtctcta
caagagttaggaacattagaaggaagtcggcggtttttggggttggcttttgcaaaaccg
gcttcattgctggattatttagcagaaaatacccttgtggccattgatgaaccagaacaa
tgttatgctcatagcgatcgctgggtggaaaatgctaatagtcagtggtcagttgttagt
ggtcagttgtcggttggattacctaagattcatcgaaattttgatgagtgtataggggaa
attagtaattttagaaagttatatttatcagaattgtcggaagaaaataatggtttaaat
ttagcaagtagacctttacctgttacacctcaccaatttgccaagttaggggaaactatt
agaaacgagagagaacgcaattttgcagtttggataatttcggctcaaccttcccgttcg
gtttctctgctacaagaacatgattgtcctgcccagtttatccccaatccccgtgattat
caagctattgataaactgcaaattaatcatatcccgattgcccttaaatattccggttta
gcagaattagaaggttttattttaccttcttttcgattagttattgtcaccgatagagaa
ttttatggacaacattctttagctaattttggttatgtccgcaaacgtcgtcaagccaca
tctaaacaagttgatcctaataaattacgtcagggagattatgttgttcatcgtagtcat
ggcattggtaaatttgttaaattagagagtttaacaattaatgatgaaacccgtgattat
ttagtcgtgcaatatgcagatggtttattaagagttgcggctgaccaagttagttcttta
tctcgttttcgcaccagtggagataaagccccagaattacacaaaatgaccggaaaagcc
tgggaaaatactaagaataaagtccgtaaagccattaagaaactagcagtagatttgtta
aaattgtatgctgcccgttctcaacaacaaggtttttcctatcccgcagatatgccttgg
caagaagaaatggaagattcctttccttaccaacctaccacagatcagctaaaagcggta
caagatgtgaaacgggatatggaaagtgaaagaccgatggataggttagtatgtggagat
gtgggttttggcaaaactgaagtggcaattcgggcaatttttaaagctgtcaccgcagga
aagcaagtagcacttttagccccaaccacaattctcactcaacaacattatcatacaatt
aaagaacgttttgccccctatcctgtgaacgtggggttactaaatcggtttcgcagcgca
gaagaaaaacgcaatattcaaaaacgtctagcgactggagaattagatatagttgtcggc
acacatcaattattaggaaaaggtgtgcaatttaaagatttgggacttctagtaattgac
gaagaacaaagatttggagttaatcagaaggaaaaaatcaaaagcctcaaaacgcaagtt
gatgttctcactctttccgcaactcctattcccagaaccttatatatgtcattatcagga
attcgggaaatgagtttaattaccactccacctcccaccagaagaccaattcaaacccat
ctcgcacctttaaattctgatattgtcagaagtgcaattcgtcaagaattagatcgaggt
ggacaggtattttatgtagttccgcgagtcgaagggattgaagaaactactacaaaattg
cgagaaatggtaccaggaggaagatttgcgatcgctcatggtcaaatggacgaaagcgag
ttagaatcaactatgctgacttttggcaataatgacgctgatattcttgtttgtaccaca
attattgaatctggtttagatattccgcgagttaacacaatattaattgaagatgctcac
cgttttgggttatctcaattatatcaattacggggtcgggtaggacgtgctggcattcaa
gctcacgcatggttattttaccctaaacaaagagaattatccgatgccgccagacaaaga
ttaagagcaattcaagaatttactcaactcggttctggatatcaattagcaatgcgagat
atggaaattcgcggagtgggaaacttgctaggtgcagaacaatctggacaaatggatgtc
attggctttgacttgtacatggaaatgttagaagaagcaattcgagaaattagaggtcaa
gaaatacccaaagttgaagatacccaaattgaccttaatctcaccgcatttatccctgca
acctacattcctgatcttgatcaaaaaatgagtgcttatcgcgctgtagccacagtaaaa
tcaaaatatgaactcaaacaaattgccgctgaatggactgatagatatgggactatacca
gttccagctagtcagttattacgagttatggaattaaaacaattagccaaaaatctcgga
tttagccgcattaaaccagagaataaacagcacattgttttagaaacaccaatggaagaa
ccagcttggaatctcttagcagaaaacctcactcccacaatgaaagcaaggtttgtttat
tctcctgggaaggtaacagcaagaggtttaggagtatttaaagcagatcaacaattgcag
actttaatagatacttttgtaaaaatgcaaggggcaatttcggaaactgcttga
DBGET
integrated database retrieval system
