Burkholderia ambifaria MC40-6: BamMC406_0335
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Entry
BamMC406_0335 CDS
T00684
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
bac
Burkholderia ambifaria MC40-6
Brite
KEGG Orthology (KO) [BR:
bac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bac03016
]
BamMC406_0335
Enzymes [BR:
bac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
BamMC406_0335
Transfer RNA biogenesis [BR:
bac03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
BamMC406_0335
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ACB62836
UniProt:
B1YRT8
LinkDB
All DBs
Position
1:380460..381008
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AA seq
182 aa
AA seq
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MNGDRLRAFVALMPDTASRDALHALPVTRGARRTLPAQLHVTLAFIGAIERARCDALAAR
LPALASAHALPLQRVERIAWWPSLPRARLIVAELAADSACAALNADLSALLRELGVPADR
RPFRPHVTLARLPRDADGQPAHGGATGRPVAVRFVALTLFESRLSHDGVSHVPIVSVPIG
RA
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcgaccggctccgtgcgttcgtcgcgctgatgcccgatacggcatcgcgcgac
gcgctgcacgcgctgccggtcacgcgcggcgcacggcgcacgctgcccgcgcaactgcac
gtgacgcttgcgttcatcggcgcgatcgaacgtgcgcggtgcgacgcgctggccgcgcgg
ctgccggcgcttgcgagcgcgcatgcgctgccgttgcagcgggtcgagcggatcgcgtgg
tggccgagcttgccacgcgcgaggctgatcgtcgcggaactcgccgccgattccgcctgt
gcggcgctgaatgccgatttatccgcgctgttgcgcgagctgggcgtgccggccgaccgc
cggccgttccggccgcatgtgacgctcgcgcggctgccgcgcgatgccgacggacagcct
gcacacggcggcgcgaccggccggccggtcgcggtgcgcttcgtcgcgctgacgctgttc
gaaagccgcctgtcgcacgacggtgtgtcgcatgtgccgatcgtgtcggtgccgatcggg
cgggcgtag
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