Balaenoptera acutorostrata scammoni (minke whale): 102997872
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Entry
102997872 CDS
T03086
Symbol
SKIV2L2
Name
(RefSeq) Ski2 like RNA helicase 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bacu
Balaenoptera acutorostrata scammoni (minke whale)
Pathway
bacu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bacu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102997872 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bacu03019
]
102997872 (SKIV2L2)
03041 Spliceosome [BR:
bacu03041
]
102997872 (SKIV2L2)
03009 Ribosome biogenesis [BR:
bacu03009
]
102997872 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
bacu03016
]
102997872 (SKIV2L2)
Enzymes [BR:
bacu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102997872 (SKIV2L2)
Messenger RNA biogenesis [BR:
bacu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102997872 (SKIV2L2)
Spliceosome [BR:
bacu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102997872 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
102997872 (SKIV2L2)
Ribosome biogenesis [BR:
bacu03009
]
Eukaryotic type
Pre-60S particles
Helicases
102997872 (SKIV2L2)
Transfer RNA biogenesis [BR:
bacu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102997872 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
Motif
Other DBs
NCBI-GeneID:
102997872
NCBI-ProteinID:
XP_007195656
UniProt:
A0A384B7G7
LinkDB
All DBs
Position
Un
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGAKKDKEKEKGKWKGPPGSAEKAGRRFDGKLQSESTNIG
KNKRDADFEGTDEPIFGKKPRVEESITEDLSLSDLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRAGKAAKEYPFILDAFQREAIHCVDNNQSVLVSAHTSSGESVCREYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKS
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFSEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgagcttttcagcgtgtttgaggacgactcgaccactgcg
cccggagccaaaaaagacaaggaaaaggagaaggggaaatggaaggggccgccagggtct
gcggaaaaggccggaagacgttttgatggtaaattacaatctgagtcaactaatattgga
aaaaacaagagagatgcagacttcgagggcacagatgaacccattttcggaaagaagccc
agggtagaagagtcaataactgaagacttaagtttgtcagacttgatgcccagggtcaag
gtacaatcagttgaaactgttgaagggtgtacacatgaggttgcacttcctgcagatgaa
gattatctaccacttaaacctcgcgctggaaaagctgcaaaggaatacccgttcattctt
gatgcttttcaaagagaagccattcactgtgttgataataatcagtctgttctagtatct
gcacatacgtccagtggtgaaagtgtatgtagggaatatgccattgcattggccttaagg
gaaaaacagcgtgtaatatttactagcccaattaaggccctgagtaaccagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgttgtatgggaagaaactattattttgcttcctgataatgttcactatgtc
tttctttcggctactattccaaatgctcggcagtttgctgaatggatttgccacttacat
aaacagccttgtcatgtaatttacacagattatcggcctactccgttacagcactacatt
tttccagcagggggagatggtctgcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcgatgcaggtacttcgagatgctggtgatttggcaaaaggagat
cagaaggggagaaaaggaggaacaaagggaccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaactttcaacctgtaattattttcagttttagtaagaaagattgtgaa
gcctatgcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaacgcaattgactgcttgtcagatgaagataaaaagctccctcag
gttgaacatgtacttcctctcttgaagcgggggattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttattt
gccactgagacttttgctatggggattaacatgccagctagaactgttttatttacaagc
gcccgaaaatttgatgggaaggatttccgatggatttcctctggtgaatacattcagatg
tctggtcgtgctggaaggaggggaatggatgacagaggaattgtaattcttatggtagat
gaaaagatgagcccaacgattggaaaacaactacttaagggctcagctgatcctctaaat
agtgctttccatttgacctacaacatggttttgaacttactacgagtagaagaaataaat
cctgagtacatgttggaaaaatccttctatcagtttcagcattatagagcaattccagga
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgaa
gaaagtgtagtcatctattataagattaggcagcagcttgccaaattgggtaaagaaatt
gaagaatatattcacaaaccaaaatattgcttaccatttctacaaccaggtcgtttggta
aaggtaaagaatgaaggagacgattttggctggggtgtagtggtgaatttctcaaaaaaa
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagtggaagtacttctg
cgctgtagcaaagagagcttgaaaaattcagctactgaggctgcaaaaccagctaagtct
gatgagaaaggagagatgcaggttgttccagttttggtgcatctcctgtctgctatcagc
agtgttaggctttacattcctaaagaccttcgaccactggacaatagacagagtgtttta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcccttactagatcctatt
gatgacatgggcattcaagatcaaggactgaaaaaagtcatccagaaagtagaggctttt
gagcatcgaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtataca
ctttgtgaaaaaaaagcacagattgcaatagacattaaatccgcaaagcgagaactaaag
aaagcaagaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaaggagg
ttgggatttgctacgtcttctgatgtcatagagatgaaaggacgagtggcttgtgaaata
agcagtgctgatgagctccttctaactgagatgatgtttaatggccttttcaatgaccta
tctgcagaacaggcaacggcactactaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcaattagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaattggaaattgatgaggagacttacctaagc
tcatttaaacctcacttaatggatgtagtatatacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactacttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aataaattttcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttataa
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