Bacterioplanoides sp. SCSIO 12839: KFF03_05335
Help
Entry
KFF03_05335 CDS
T08310
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bacz
Bacterioplanoides sp. SCSIO 12839
Pathway
bacz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bacz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KFF03_05335 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bacz03400
]
KFF03_05335 (mfd)
Enzymes [BR:
bacz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KFF03_05335 (mfd)
DNA repair and recombination proteins [BR:
bacz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KFF03_05335 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
AAA_30
ERCC3_RAD25_C
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UTW49328
UniProt:
A0A9J7AIS2
LinkDB
All DBs
Position
complement(1147772..1151233)
Genome browser
AA seq
1153 aa
AA seq
DB search
MVSPLHPDCPSKAAERRFWGDLHGASQALAIASAASQQQGLTLVVTRDPNTALRLEEEIR
FFASELPVLHFPDWEILPYDVFSPHQDIVSQRIATLSQLSDLKQGVLILPISTLLHRLPP
ANFYQGQSFALDVGANFDVDATRLKLEAAGYHCVDTVYEHGEFAVRGSIMDIFPMGQEMP
FRIELFDDEIETLRTFEPDSQRTVDKVDSIRILPAREFPLNTTAIRTFKGRWYDFFEQDG
KQCPIYTDIADGIAPAGIEYYLPLFFEDDLGNFFDHLPKNTLVIHDSELEASVEHFRKDV
EERYESRRYDIQRPILAPSHLFLAADQLFSRLNEFPRAQWHDKDLPSRAGATAYAAEKMV
DISVDSRLEQPSQRLEMWLKENAADQGGNQRVLFCAESAGRREALKDLLRRIEIRPREIE
SWDDFATGSDALGIIIGPIEHSVQLTEDQLVIITENELFGQRIQQRRRRAKKTTDADLMI
RDLSELQPGSPVVHLDHGVGRYLGLETLEAGGQTNEFLMLEYATGSKLYVPVLSLHLISR
YGGGDESTAPLNKLGSEKWAAAKRKAAEKIRDTAAELLDIYARREAKKGFAFDKPDDDYR
RFAAGFPFEETPDQQAAIEAVIGDMTGKRPMDRLVCGDVGFGKTEVAMRAAFMAVQSGKQ
VAVLVPTTLLAQQHYQNFADRFAEWPVKVDVLSRFKSAKETQASLDKMLEGQTDIVVGTH
KLLQKDVKFDQLGLLIIDEEHRFGVTQKERIKSLRANVDILTLTATPIPRTLNMAMASIR
DLSIIATPPAKRLSVKTFVRQHDDATIKEAILREILRGGQVYYLHNEVKSIEKVARELSE
AIPEARVTFAHGQMSERELEGVMGDFYHKRANVLVCTTIVETGIDIPSANTMIIERADKF
GLAQLHQLRGRVGRSHHQAYAYLLTPPPKTMTKDAEKRLEAISSAQDLGAGFMLATHDLE
IRGAGELLGDEQSGQIETIGFTLYMEMLEQAVNAIKSGKQPGDDLVLNQGTEVNLHVPAL
IPADYLPDVNGRLTLYKRIASARDEAGLKDLQIEMIDRFGLLPDAVKNLFRQTALKLKLT
PLGIAKLDASDEAGRIEFAAETQIDPFTLVKLVQTKPNSYKLEGGHTLRFFFNMRSMDQR
FNVIEQVVSQLQQ
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggtcagcccgctacacccagattgcccgagtaaagccgcggaacgtcgcttttgggga
gacctgcacggtgccagtcaggcattggcgattgccagcgcggcgagccagcaacaaggt
ctgactctggttgtcacccgtgatccaaacaccgctctgcgtctggaagaagagattcgc
ttctttgccagcgaactgccggtattacacttcccggattgggaaatcctgccctacgat
gtattttctccacaccaggatattgtctcccaacgtattgcgaccctgagccagctgagc
gatttaaaacaaggggttctgatcctgccaatcagcaccctgctgcatcgtttaccgcca
gccaacttttatcagggtcagagttttgcgctagatgtcggagccaattttgatgtcgac
gccacccgcctgaaactggaagcagccggttaccattgtgtggatactgtgtatgaacac
ggcgagtttgccgtacgtggttcgattatggacatcttccccatgggtcaggagatgccg
ttccgtatcgaattattcgatgatgaaattgaaaccctgcgtacctttgagccggatagc
cagcgtaccgtcgataaagtggattccatccgtattttgcccgcgcgcgaatttccacta
aacaccacggccattcgtacctttaaaggccgctggtacgacttctttgaacaagatggc
aaacagtgcccgatttataccgatattgctgacggtattgcgccggccggtatcgaatat
tatcttccgctgttttttgaagacgatttaggtaacttctttgatcacctgccaaaaaat
accctggtgattcacgacagcgaattagaagcctcggttgaacatttccgcaaagacgtt
gaagaacgttacgaaagccgtcgttacgatattcagcgcccgattctggcacccagccat
ttattcctggcagccgatcagttattcagccgtttaaacgagttcccacgtgcccaatgg
cacgataaagacttacccagtcgtgccggtgccaccgcatatgccgccgaaaaaatggta
gatatcagtgttgactcccgtttggagcaaccctctcaacgcctggaaatgtggttgaaa
gaaaacgcggcagatcagggtggtaatcagcgggttttattctgtgcagaatctgccggt
cgccgtgaagcattaaaagatttattacgccgcattgaaattcgtccacgggaaatcgag
agttgggatgactttgcaaccggtagcgatgctctcggtattattatcggcccgattgag
cacagtgttcagctgaccgaagatcagctggtgatcatcactgaaaacgaattattcggc
caacgcattcagcagcgccgtcgccgcgctaaaaaaaccaccgatgcggatttaatgatc
cgtgatttatccgagttacaaccgggttcgccggtggtgcatttggatcacggtgtgggc
cgttatttaggattggaaacgttagaggccggaggtcagaccaacgagtttttaatgctg
gaatacgccaccggttcaaaattatacgtgccggttttatcgctgcatttaatttcccgt
tatggcggcggtgatgaaagcaccgcaccgctgaataaactcggcagtgaaaaatgggcc
gcagccaaacgcaaagcggccgaaaaaatccgcgatactgcggctgagctactggatatt
tacgctcgccgtgaagcgaaaaaaggttttgctttcgataagcccgacgatgattaccgc
cgttttgccgcgggtttcccatttgaagaaacacccgatcagcaagcagccattgaagct
gtgattggtgatatgaccggcaaacgcccaatggaccgcctggtgtgtggtgacgttggt
tttggtaaaaccgaagtggccatgcgtgccgcctttatggccgtgcaaagcggtaaacag
gtggcggtattagtaccgacgaccctgctggcgcaacagcactaccagaacttcgccgac
cggtttgccgaatggccggtcaaagtcgatgtgttatcacggtttaaatccgccaaagaa
acccaggcctcgttggataaaatgctcgaaggccaaacggatattgttgtgggtactcac
aaactgctgcaaaaagatgtgaagttcgaccagctcgggttattaattatcgatgaagaa
caccgctttggtgtgactcaaaaagagcgcataaaatccctgcgtgccaacgttgatatc
ctgacgttaaccgccacgccaattccacgaacgttaaatatggcaatggcgagcattcgt
gatttatccattattgccacaccgccggctaaacgtttaagtgtgaaaacctttgttcgc
cagcacgacgacgccaccattaaagaagcgattttgcgggaaatcctgcgtggtggtcag
gtgtattacctgcataacgaagtgaaaagcattgaaaaagtggcacgtgaattaagcgaa
gccattcccgaagcacgggtcacctttgcccatggccaaatgagtgagcgtgaattagaa
ggcgtgatgggcgacttctatcacaaacgtgccaacgtgctggtgtgtaccaccattgtg
gaaaccggtatcgatattccatcagccaacaccatgattatcgaacgcgcggataaattc
ggcttagcgcagctgcaccagctgcggggtcgtgttggtcgttcgcatcaccaggcgtat
gcctatttattaacaccgccgccaaaaaccatgaccaaagatgcggagaaacgtttggaa
gcgatttcctctgcgcaagatcttggcgctggctttatgctggccacccacgatttggag
attcgtggtgccggtgaattattaggcgacgaacaaagtggccagatcgaaaccattggt
ttcaccctgtatatggaaatgctggagcaagcggttaacgcgattaagtccggcaaacaa
ccgggtgacgatctggtactgaatcagggcacggaagtgaacctgcacgttccggcgtta
attccggcggattatctgcccgatgtaaatggtcgtttaaccctgtataaacgcatcgcc
agcgcccgtgatgaagcgggattaaaagacttacaaattgaaatgatcgaccgttttggt
ttattaccggatgcagtgaaaaacctgttccgccagactgcgctgaagctcaaattaaca
ccactgggtatcgccaaactggatgccagtgacgaagccggtcgtatcgaatttgccgct
gaaactcagattgaccctttcactctggtgaagctggtgcaaaccaaacccaacagctat
aaactcgaaggcggccacacactgcgcttcttctttaatatgcgcagcatggatcaacgt
tttaacgtgatcgaacaagtcgtttcgcaactccaacaataa
DBGET
integrated database retrieval system
