Bacillus sp. LM 4-2: BsLM_1106
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Entry
BsLM_1106 CDS
T03908
Name
(GenBank) ATP-dependent deoxyribonuclease subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
balm
Bacillus sp. LM 4-2
Brite
KEGG Orthology (KO) [BR:
balm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
balm03400
]
BsLM_1106
Enzymes [BR:
balm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BsLM_1106
DNA repair and recombination proteins [BR:
balm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
BsLM_1106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_12
DEAD
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
AKE22905
LinkDB
All DBs
Position
1116809..1120507
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AA seq
1232 aa
AA seq
DB search
MNIPKPADSTWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRL
LVVTFTNASAAEMKHRIAEALEKELVQRPGSLHIRRQLSLLNRASISTLHSFCLQVLKKY
YYLIDLDPGFRIADQTEGELIGDEVLDELFEDEYAKGEKAFFELVDRYTTDRHDLDLQFL
VKQVYEYSRSHPNPGAWLESFVHLYDVSEKSAIEELPFYQYVKEDIAMVLNGAKEKLLRA
LELTKAPGGPAPRADNFLDDLAQIDELIQHQDDFSELYKRVPAVSFKRAKAVKGDEFDPA
LLDEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPVIETLVQLVISYGKRFEAAK
QEKSIIDFSDLEHYCLAILTAENDKGECEPSEAARFYQEQFHEVLVDEYQDTNLVQESIL
QLVTSRPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESGEGTGRKIDLNKNFRS
RADILDSTNFLFKQLMGGKIGEVDYDEQAELKLGAAYPDNDETETELLLIDNAEDTDASE
EAEELETVQFEAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIME
ELRAQGIPVYANLTSGYFEAVEVAVALSVLKVIDNPYQDIPLASVLRSPIVGADENELSL
IRLENKKAPYYEAMKDYLAAGDRNDELYQKLNTFYGHLQKWRAFSKNHSVSELIWEVYRD
TKYMDYVGGMPGGKQRQANLRVLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARA
LSEQEDVVRLMTIHSSKGLEFPVVFAAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLR
ISYPTLPLIAMKKKMRRELLSEELRVLYVALTRAKEKLFLIGSCKDHQKQLAKWQASASQ
TDWLLPEFDRYQAKTYLDFIGPALARHRDLEDLAGVPAHADISDHPARFAVQMIHSYDLL
DDDLEERMEEKSERLEAIRRGEPVPGSFAFDEKAREQLSWTYPHQEVTQIRTKQSVSEIK
RKREYEDEYSGRAPVKPADGSILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIE
EAEQTVHRLYEKELLTEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKE
IYPDAQEADEPLLVQGIIDCLYETEDGLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQ
IQLYTKAVEQIAKTKVKGCALYFFDGGHILTL
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgaacattcctaaaccggcagacagcacatggacagatgaccaatggaatgccattgtt
tcaaccggccaggatattcttgtggcagcggctgcgggctctggtaaaaccgctgtgctc
gttgaacgaatgattcggaaaatcaccgcggaggaaaacccaatagatgtagaccgtctt
ctcgttgtgacatttacaaacgcctcagcggcagagatgaagcaccgaatcgcagaagcc
ttggaaaaagagcttgtacagcgccccggctcgctgcatattagacgccagctgtctctt
ttaaaccgggccagcatttcgacgctccattccttttgcctgcaagtgctgaagaaatat
tactacttgatcgatcttgatccgggctttcggatagctgatcagacggaaggcgagctg
atcggggatgaagtgcttgacgagctgtttgaagacgaatatgcaaagggcgaaaaggcg
ttttttgagcttgttgaccgctatacgacagaccggcatgatctggatctgcaatttctc
gttaaacaggtgtacgagtattcccgatcccatcccaacccgggggcgtggctggaaagc
tttgttcatttgtatgatgtatcagaaaagagcgccatcgaggagctgccgttttatcaa
tatgtcaaagaagatattgcaatggtgcttaacggggcgaaggaaaagctcttgcgcgcg
cttgagctgacgaaagcgccgggcggcccggcgccgcgtgctgacaattttcttgatgat
cttgcgcagattgatgaactgattcagcatcaggacgatttcagtgaactatataagcgg
gtgcccgccgtctcttttaagcgtgccaaagcagtaaaaggggatgagttcgatccagcg
ctccttgatgaggcgacagatttgagaaacggcgcaaaaaaactgcttgaaaagctcaaa
accgactacttcacgcgaagtcctgaacagcacttgaaaagcctagccgagatgaagcct
gtcattgaaacgctcgtacagcttgtcatcagctatggaaaacgattcgaagctgcgaaa
caggaaaaatcaatcatcgatttttctgatttggagcattactgtttagcgattttgaca
gctgagaatgacaaaggtgaatgtgagccgagcgaggctgcaaggttttatcaggaacag
tttcatgaggtgctcgttgacgaatatcaggataccaacctcgtgcaggaatcgattctg
cagctcgtcacaagcaggccggaggagactggcaacctgtttatggtaggagatgtcaaa
cagtcgatttatcgattcaggcttgcggagccgcttcttttcctctctaaatacaaacgg
tttacagagagcggagaaggcacggggcggaaaatcgatttaaataaaaatttccgaagc
cgggctgatattttagacagcacaaactttttatttaaacagctgatgggcggcaaaatc
ggtgaggtcgattatgacgagcaggctgagctgaagcttggtgcagcgtatccggacaat
gacgagacggaaacagagctgctgctgatcgacaacgcagaagatacggatgcaagcgag
gaagcagaagagcttgaaacggtgcagtttgaggcaaaagccatcgctaaggaaattcgc
aagctgatttcatcgccatttaaggtgtatgacggaaaaaagaaaacacatcgcaatatt
caataccgagatatcgtgattttgctccgttcgatgccgtgggctccgcaaatcatggag
gagctgagagcacagggcataccggtttacgccaatttaacgtcaggctattttgaagcg
gtcgaagtcgccgtcgcgctttctgtgctgaaggtgattgataatccgtatcaggatata
ccgcttgcctctgttctgcgctcaccgattgtcggagcagatgaaaacgagctgtctttg
atccggcttgaaaataaaaaagcgccgtactatgaggcgatgaaagactacctggctgct
ggtgaccggaacgatgagctttatcaaaagctaaatacgttttacggacatctgcaaaag
tggcgcgcgttttcgaaaaaccactcagtatctgagctgatttgggaagtgtaccgcgac
accaaatatatggattatgtcggcggcatgccgggcggaaaacagcgccaggccaatttg
cgtgttctttatgacagggcgcgtcaatatgaatcaacggcatttcgcggcttgttccgt
ttcctgcggtttatcgaacgcatgcaggagcggggcgatgatcttggtacggcgagagcg
ctcagcgagcaggaggatgttgtccgcttaatgacgatccacagcagcaaagggctcgaa
tttccagtcgtgtttgcagcgggtctcggacggaatttcaacatgatggatttgaacaaa
tcgtacctgctggataaggagctcggatttggcacgaagtatattcatccgcaattacgc
atcagctatccgacacttccgctcattgcgatgaagaaaaaaatgcgcagggagctgctg
tcagaggaattgcgtgttctctatgttgcattaacgagagcgaaggaaaagctgtttctg
attggctcatgtaaggatcatcagaaacagcttgcaaaatggcaggcatccgcgtcccaa
actgattggcttctgccagaatttgaccgctatcaggcgaaaacgtatctagatttcatc
gggccggctcttgccaggcacagagacttggaggatttggctggcgtgccagcacacgct
gacatctcagatcacccggctcgttttgccgttcaaatgatccattcctatgatttgctt
gatgatgatctggaagaaagaatggaagaaaaaagcgagcgcctagaagcgatccgccga
ggtgaaccagttcccggctcgtttgcgtttgatgaaaaagcccgcgagcagctgagctgg
acctacccgcatcaagaagtgacgcaaattcggacaaagcaatcagtttctgagatcaag
agaaaaagagagtacgaggatgaatacagcggcagggcccctgtaaaaccggctgatgga
agcattctgtacagacgtcccgcttttatgatgaaaaaaggcctgacagcggcagagaaa
gggactgccatgcatacggttatgcagcatatcccgctgtcacatgtgccgtcgatagaa
gaagctgagcagacggttcacaggctttatgaaaaagagcttctcactgaagaacaaaaa
gacgctattgatatagaagaaatcgtgcaatttttccatacagaaatcggcggacagctg
atcggcgcaaagtggaaggacagggaaataccattcagcttagcgcttccggccaaggag
atctatcctgatgcacaggaggcagatgagccgcttttagtgcagggtatcattgactgt
ctctatgaaactgaggacggattatatctattggattataagtcggaccggattgagggc
aaattccagcatggatttgaaggagcggccccgatcttgaagaaacgatatgaaacgcaa
attcagctgtacacgaaggcagtggagcaaattgcaaaaacaaaggtaaagggatgtgcg
ctttatttctttgacggagggcacattctgacattatag
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