Bacillus sp. LM 4-2: BsLM_1543
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Entry
BsLM_1543 CDS
T03908
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
balm
Bacillus sp. LM 4-2
Pathway
balm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
balm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BsLM_1543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
balm03019
]
BsLM_1543
Messenger RNA biogenesis [BR:
balm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BsLM_1543
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
SIS_2
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AKE23342
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All DBs
Position
complement(1496878..1498545)
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AA seq
555 aa
AA seq
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MKFVKNDQTAVFALGGLGEIGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYL
VKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLAIGLLRNKLEEHGLLRQTKLN
IIGEDDIVKFRKTAVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSENPEFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VIEAAVQNGRKVAVFGRSMESAIEIGQTLGYINCPKNTFIEHNEINRMPANKVTILCTGS
QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGPL
NDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIPEENCFIMDNGE
VLALKGDEASVAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSIDMDDFKI
SAGPDLISRGFVYMRESGDLINDAQELISNHLQKVMERKTTQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaatgatcagactgctgttttcgccctcggaggtttgggcgaaatc
ggtaaaaatacgtacgcggtgcaattccaggatgaaattgtactgattgatgcggggatc
aagtttcccgaggacgaactgctcggaattgactacgtcatccctgattatacgtattta
gtcaaaaacgaagataaaattaaagggctttttatcacccacgggcacgaagaccacatc
ggcggtattccatacctgctcagacaagtgaatattcctgtatacggcggaaaactcgcg
atcggcttacttcggaataaacttgaagagcatggattattgagacagacgaaactgaac
attatcggcgaggatgatattgtaaagttccgcaaaacggctgtgtcattcttcagaaca
acacacagtattccggattcctacggcattgttgtaaaaacgccgcccggaaacatcgta
catactggggatttcaaattcgactttactccagtcggcgagccggcaaacttaacgaaa
atggccgaaatcggtaaagaaggcgttttgtgccttctttcagacagcacaaacagtgaa
aatccggagtttaccatgtctgagcgccgtgtaggagaaagcattcatgacattttccgc
aaggtggacggccgaattatcttcgccacatttgcgtcgaatattcaccgcttgcagcag
gtaattgaagctgctgtacaaaatggaagaaaagttgccgtatttggacgcagtatggaa
tcggctatcgaaattggacagacactcggttatattaactgtcctaaaaatacgtttatt
gagcataacgaaatcaatcgtatgcctgctaataaagtaacaattttatgtacaggaagc
caaggggaaccaatggcggcgttatcaagaattgcaaacggcacacaccgccaaatttca
atcaatcctggggatacagtcgtattttcttcatcccctatcccaggcaacacaatcagc
gtgagtcgaacaatcaaccagctgtatcgtgcgggtgctgaggttattcacggccctctt
aacgatatccatacatccggtcacggcggacaggaagaacagaagctgatgcttcgttta
atcaagcctaaattcttcatgccgattcacggtgagtacagaatgcaaaagatgcatgtc
aaacttgcaacagattgtggcatcccagaggaaaactgctttatcatggataatggtgaa
gtattagcacttaaaggcgatgaggcttcagttgcaggaaaaatcccgtccggttcagtg
tacattgacggaagcggtatcggtgatattggcaatatcgtacttcgtgatcgcagaatt
ctctctgaagaaggacttgtcatcgttgttgtcagcattgacatggacgacttcaagatt
tcagcgggtcctgatttgatttccagaggatttgtgtacatgagagaatctggtgacttg
atcaacgacgctcaagagctcatttcaaatcacttacaaaaagtaatggaacgaaaaacg
actcaatggtctgaaatcaaaaacgaaattacagacacgcttgcacctttcttgtacgaa
aaaacaaagcgccgtccaatgatcctgccgatcattatggaggtttaa
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