Burkholderia ambifaria AMMD: Bamb_0326
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Entry
Bamb_0326 CDS
T00398
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
bam
Burkholderia ambifaria AMMD
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bam03016
]
Bamb_0326
Enzymes [BR:
bam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Bamb_0326
Transfer RNA biogenesis [BR:
bam03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Bamb_0326
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ABI85886
UniProt:
Q0BIY7
LinkDB
All DBs
Position
1:372275..372823
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AA seq
182 aa
AA seq
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MNGDRLRAFVALMPDTASRDALHALPVTRGARRTLPAQLHVTLAFIGAIERARCDALAER
LPALASAHALPLQRVERIAWWPSLPRARLIVAELAADPACTALNADLSALLRELGVPADR
RPFRPHVTLARLPRDADGQPAHGGATGRPVAVRFVALTLFESRLSHDGVSHVPIVSVPIG
RA
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcgaccggctccgtgcgttcgtcgcgctgatgcccgatacggcatcgcgcgac
gcgctgcacgcgctgccggtcacccgcggtgcacggcgcacgctgcccgcgcaactgcac
gtaacgcttgcgttcatcggcgcgatcgaacgtgcgcggtgcgacgcgctggccgagcgg
ttgccggcgctcgcgagcgcgcatgcgctgccgttgcagcgggtcgagcggatcgcgtgg
tggccgagcctgccgcgcgcgcggctgatcgtcgcggaactcgccgccgatcccgcctgt
acggcgctgaatgccgatttatccgcgctattgcgcgaactgggcgtgccggccgaccgc
cggccgttccggccgcatgtgacgctcgcgcggctgccgcgcgatgccgacggacagccc
gcgcacggcggcgcgaccggccggccggtcgcggtgcgcttcgtcgcgctgacgctgttc
gaaagccggctgtcgcacgacggtgtgtcgcatgtgccgatcgtgtcggtgccgatcggg
cgggcgtag
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