Bacillus velezensis NAU-B3: BAPNAU_0106
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Entry
BAPNAU_0106 CDS
T02859
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bamb
Bacillus velezensis NAU-B3
Pathway
bamb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bamb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BAPNAU_0106 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bamb03021
]
BAPNAU_0106 (rpoB)
03400 DNA repair and recombination proteins [BR:
bamb03400
]
BAPNAU_0106 (rpoB)
Enzymes [BR:
bamb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BAPNAU_0106 (rpoB)
Transcription machinery [BR:
bamb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BAPNAU_0106 (rpoB)
DNA repair and recombination proteins [BR:
bamb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BAPNAU_0106 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
CDH93887
LinkDB
All DBs
Position
122931..126446
Genome browser
AA seq
1171 aa
AA seq
DB search
MLELPNLIEIQTSSYQWFLDEGLREMFQDISPIEDFTGNLSLEFIDYSLGDPKYPVEESK
ERDVTYSAPLRVKVRLINKETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSP
SVYFSGKVDKNGKKGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFG
SDQEILDLIGENEYLRNTLDKDNTENSDKALLEIYERLRPGEPPTVENAKSLLDSRFFDP
KRYDLANVGRYKINKKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDKVLPYL
ENGIGFRKLYPNGGVVEDEVMLQSIKIYAPTDAEGEQTINVIGNAYIEEAIKNITPADII
SSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTNT
ITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTRKRRLSALGPGGLTRERAGME
VRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFGFIETPYRRVDPETGKVTPRID
YLTADEEDNYVVAQANAKLSDDGSFLDDSIVARFRGENTVVARNRVDYMDVSPKQVVSAA
TACIPFLENDDSNRALMGANMQRQAVPLMQPEAPIVGTGMEYVSGKDSGAAVICKHPGIV
ERVEAKNVWVRRYEEIDGQKVKGNLDKYSLLKFVRSNQGTCYNQRPIVSVGDEVVKGEIL
ADGPSMELGELALGRNVMVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESEARDT
KLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVNDGDLLVGKVTPKGVTELTAEERLLH
AIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEG
DKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHMGMAARY
LGIHIASPVFDGAREEDVWETLEEAGMSRDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAH
MVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDD
VVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGMDVKILSGDEEEIEMRDLEDEED
AKQADGLALSGDEAPEETASPDVERDAVTKE
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
gtgttagaattaccaaatctcattgaaattcaaacctcttcttatcagtggtttcttgat
gagggtcttagagagatgtttcaagacatatcaccaattgaggatttcactggtaacctc
tctcttgagttcattgactacagtttaggagatcctaagtatcccgttgaagagtcaaaa
gaacgtgatgtgacttactcagctccgctgagagtgaaggttcgtttaattaacaaagaa
actggagaggtaaaagaccaggatgtcttcatgggtgatttccctattatgacagatacc
ggtacttttatcatcaacggtgcagaacgtgttatcgtatctcagcttgttcggtctcca
agtgtatatttcagtggtaaagtagacaaaaacggtaaaaaaggttttaccgcgactgtc
attccaaaccgtggcgcatggttagaatacgaaactgatgcgaaagatgttgtgtatgtc
cgcattgatcgcacacgtaagttgccggttacggttcttttgcgtgctctcggcttcggt
tccgaccaagagattctcgatctcattggtgagaacgaatatctccgcaatacactggat
aaggacaacactgaaaacagtgacaaagcgcttcttgaaatctatgagcgccttcgtccc
ggagagccgcctacagtagaaaacgcaaaaagcttgctggattcccgtttcttcgatccg
aagcgatacgaccttgcgaatgtaggacgctataaaattaataaaaagcttcatatcaag
aaccgcctgtttaaccagcgacttgcagaaacactggtggatccggaaaccggtgaaatt
ctcgctgaaaaagggcagattcttgacagaagaacacttgataaagtactgccatactta
gaaaatggaatcggcttcagaaaactttatcctaacggcggcgtcgtcgaggatgaagtg
atgcttcaatccattaaaatctatgctcctaccgatgcagaaggagagcagacgatcaat
gtgatcggcaatgcttacatcgaagaggcgattaaaaacattacgcctgctgatattatt
tcttctatcagctacttcttcaacctcctgcacggagtgggcgacactgatgatatcgac
catctcggaaaccgccgtctgcgttctgtaggtgagctcctgcaaaaccaattccgtatc
ggtttaagccggatggaacgtgtcgtacgtgaaagaatgtctattcaagacacaaataca
atcacgccgcagcagctgattaacatcagacctgttattgcgtctattaaagagttcttc
ggaagctcacagctttctcaattcatggatcagacgaacccgcttgctgaattgacgcgc
aaacgccgtctgtcagctctcggaccgggcggtttgacacgtgagcgcgcaggtatggaa
gtacgtgacgttcactactctcactatggccgtatgtgtccgattgaaacgcctgagggc
ccgaacatcggtttgatcaactcattgtcatcatttgcgaaagtaaaccgctttggtttc
attgagacgccataccgccgcgttgatcctgaaacaggaaaagtaacgcctagaatcgac
tacctgactgctgatgaagaggataactatgtcgtagcccaagcgaatgctaagctgagc
gatgacggttctttcttggatgacagcatcgtagcgcgtttcagaggggaaaacaccgtt
gtagcccgcaaccgcgtggattacatggacgtatctcctaaacaggttgtttctgctgcg
acagcatgtattccgttcttggaaaacgatgactcgaaccgcgccctcatgggagcgaac
atgcagcgtcaggctgtgcctttgatgcagccggaagctccgatcgtcggaacgggtatg
gaatatgtatccggtaaagactccggtgcagccgttatttgtaaacaccctggtatcgtt
gaacgggtggaagcgaaaaacgtatgggtgcgccgctatgaagaaattgacggccaaaaa
gtaaaaggcaacctggataagtacagcttgctgaaatttgtccgctccaaccaaggtacg
tgctacaaccagcgtccgatcgtcagtgtcggcgatgaagtagtcaaaggagaaatcctt
gctgacggaccttcaatggagcttggtgaacttgctctcggccgcaacgtaatggtcggc
ttcatgacatgggatggttacaactatgaggatgccatcatcatgagtgaacgccttgtg
aaagatgatgtatacacatctattcacattgaagaatatgaatcagaagcacgtgataca
aagcttgggcctgaagagatcacccgcgatattccaaacgtaggggaagacgcgcttcgc
aatcttgatgaccgcggaattatccgtatcggtgcggaagtcaacgacggagaccttctc
gtaggtaaagtaacgcctaaaggtgtaactgagcttacggctgaagaacgccttctgcat
gcgatctttggagaaaaagcgcgtgaagtccgtgatacttctctccgtgtgcctcacggc
ggcggcggaattatccacgacgtaaaagtcttcaaccgtgaagacggcgacgaacttcct
ccgggagtgaaccagcttgtacgcgtatatatcgttcagaaacgtaagatttctgaaggt
gataaaatggccggacgtcacggaaacaaaggggttatctcgaagattcttcctgaagaa
gatatgccttaccttcctgacggcacgccgatcgatatcatgcttaacccgctgggtgta
ccatcacgtatgaatatcggtcaggtattagaacttcacatgggtatggctgcccgctac
ctcggcattcacatcgcgtcacctgtatttgacggcgcgcgtgaagaagatgtgtgggaa
acacttgaagaagcaggcatgtcaagagacgctaaaacagttctttatgacggccgtacg
ggagaaccgttcgacaaccgtgtatcagtcggaatcatgtacatgatcaaactggcgcac
atggttgatgataaacttcatgcccgttctacaggtccttactcacttgttacgcagcag
cctctcggcggtaaagcccaattcggcggacagcgtttcggtgagatggaggtttgggcg
cttgaagcttacggcgcagcttacacgcttcaagaaatcctgactgtgaagtccgatgac
gtggtcggacgtgtgaaaacatatgaagccatcgtcaaaggcgacaatgttccagagcct
ggtgttccggaatcattcaaagtattgatcaaagagcttcaaagcttaggtatggacgtg
aaaatcctttcaggcgatgaagaagaaatagaaatgagagatctagaagacgaggaagat
gcgaaacaggctgacggccttgcattatcaggtgatgaagcgccggaagaaacagcatct
ccagacgttgaacgtgacgcagtaacgaaagaatag
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