Bartonella apihabitans: BBC0178_003510
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Entry
BBC0178_003510 CDS
T08729
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bapa
Bartonella apihabitans
Pathway
bapa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bapa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BBC0178_003510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bapa03400
]
BBC0178_003510
Enzymes [BR:
bapa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BBC0178_003510
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BBC0178_003510
DNA repair and recombination proteins [BR:
bapa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BBC0178_003510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zinc-ribbons_6
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AQT41855
UniProt:
A0A1U9M959
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All DBs
Position
complement(407369..408244)
Genome browser
AA seq
291 aa
AA seq
DB search
MPELPEVETVKRGLEPSFTHAKIINVKQNRPDLRFPFPENFQSRLTGREIIGLGRRAKYL
LIYLDNEETIISHLGMSGSWRVENRTPGSYYHEKNKLAVHDHFEMDIRTENGELLHAVYN
DPRRFGFMLLTKTADLEHHKLLAHLGPEPTGNSLSGAYLNEVLRNRSAPLKAALLDQTII
AGLGNIYVCEALWRSHLSPKRKSLTLGKKSAAAQQKSKLLAQNIRDVINKAIEAGGSSLR
DYVHTDGSLGYFQHHFSVYGREGEPCLQCGTPIKRIVQSGRSSFYCPHCQT
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttcctgaagttgaaactgtaaagcgtggtctcgaaccaagtttcacccat
gcaaagataataaacgttaaacaaaaccggccggatttacgttttccatttccggaaaat
tttcaatcccgtcttacggggcgcgaaattatcggcctcggacgacgggcaaaatatctg
cttatctatcttgataatgaggaaacaatcataagccatttgggtatgtcgggttcctgg
cgtgtcgaaaatagaacacccggttcctattatcatgaaaaaaacaagcttgctgtacat
gaccattttgaaatggatatcagaacagaaaacggcgagcttttacatgccgtctataat
gatccacgccgtttcggctttatgctgttgacaaaaacggctgaccttgaacaccataaa
ttattggcccatttaggccccgaaccaaccggaaacagtctttccggtgcctatcttaac
gaggttctacgtaacaggtcagcccctcttaaagccgcacttcttgaccagaccatcatt
gccggacttggaaatatttatgtctgcgaggccttatggcgaagtcacctttctccgaaa
cggaaatcgctaacactcggaaaaaaatcggcagcagcgcaacaaaaatcgaaattgctc
gcacaaaatattcgtgatgttatcaacaaggcgatagaggcaggcggctcttccttgcgc
gattacgtccatacagatggttcgctcggctatttccaacaccatttttcggtttatggt
cgtgaaggagaaccgtgtctccaatgcggaaccccaataaaacgcattgtccaatccggt
cgttcgagtttttattgcccccattgtcaaacataa
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