Bradyrhizobium barranii subsp. barranii: J4G43_004190
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Entry
J4G43_004190 CDS
T08665
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
bban
Bradyrhizobium barranii subsp. barranii
Brite
KEGG Orthology (KO) [BR:
bban00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bban03019
]
J4G43_004190 (hrpB)
Enzymes [BR:
bban01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J4G43_004190 (hrpB)
Messenger RNA biogenesis [BR:
bban03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J4G43_004190 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
Flavi_DEAD
AAA_30
ResIII
AAA_19
HA2_N
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UEM13532
UniProt:
A0A939M3G0
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All DBs
Position
857893..860370
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AA seq
825 aa
AA seq
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MPRSFDTPLPIDAVLDDLSRTLEAHNSAVLVAPPGAGKTTRVPLALLDAPWAAGKKIIVL
EPRRIAARASAERMAKSLRERAGETVGYRVRFGSKISRATRIEVVTEGIFTRQILDDPEL
SGIAAVLFDEFHERSLDADMGLALARDAQTGLREDLRILVMSATLDGARVAKLLGEAPVV
ESEGRAFPVETRYLGRKADAPVERQMADAIASALRADSGSVLAFLPGAAEIRRTQNFLSE
RVQDASIEIVPLFGALDAAVQDRAIAPAPKGTRKVVLATSIAETSLTIEGVRIVVDSGLA
RVPRYEPDIGLTRLETVRAARAAVDQRRGRAGRTEPGVCYRLWDEPQTASLAPYTQPEIL
SADLSSLVLDLAQWGVADPSALSFLDPPPLPAWKEAKSLLSELNALDGDGRITAEGKSLR
ALALPPRLARMIVDSHRVGSGEAAAEIAAIITERGLGGDSVDLEYRRDQFRRDRSPRAAS
ARDLARRWASQVAASEKAATGQDDLSTGLMLAYAFPDRVARNRGNGTFVLANGRGAAVEQ
TSSLARAPYIAIGEMTGTAASGRVLLAAPISEDDIERHFAEHIETVDEISFDRGAMALRA
RRKRALHAITLSEATLAVSPSEETARIFADGLIAAGLDRLPWSKAAKQWRDRVMFLRKAE
GDSWPDLSDDGLIARRDDWLVPALYDKIALKDISAGDLSDALMALLPWEMRARLDREAPT
HFEAPTGSVLAIDYEAEQGPTIAVRLQELFGLNTHPSIAAGKVPLVLELLSPAQRPVQVT
RDLPGFWRGSYAAVRSDLRGRYPRHPWPEDPASALPTRRVKPRGT
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
ttgccccgcagcttcgacacgcccctcccgatcgatgccgtgctcgacgacctctcgcgc
acgctggaggcgcataattcggccgtgctggtggcgccgcccggtgccggcaagaccacg
cgggtgccgctggcgctgctggatgcgccctgggccgcgggcaagaagatcatcgtgctg
gagccgcggcgtatcgctgcgcgggcgagtgccgagcgcatggccaagtcgcttcgagag
cgggccggtgaaaccgtcggctaccgcgtccgcttcggctcgaagatctcgcgcgcgacg
cgcatcgaggtggtgaccgaggggatcttcacccgccagatcctcgacgatcccgagctc
tccggcatcgcggccgtcctgttcgacgaattccacgagcgctcgctcgatgccgacatg
ggcctcgcgctggcgcgcgacgcgcaaaccggcctgcgcgaggatctgcgcatcctcgtg
atgtcggcaacgctcgacggcgcccgcgtggcaaagctgctcggggaagcgcccgttgtc
gagagcgagggccgcgcctttccggtcgagacgcgctatctcggccgcaaggcggatgcg
ccggtcgagcggcagatggcggatgcgatcgcgtccgcgctacgcgccgacagcggctcg
gtgctggcattcctgcccggcgccgccgaaatccgccgcacccagaatttcctcagcgaa
cgcgtccaggatgccagtatcgagatcgtgccgctgttcggcgcactcgacgctgccgtg
caggaccgcgcgatcgcgcccgcgccgaaaggcacgcgcaaggtggtgctggcgacctcg
atcgcggagacctcgctcaccatcgagggcgtgcgcatcgtggtcgattccggtctcgcc
cgcgtgccgcgctacgagcccgacatcgggctgacgcggctcgagaccgtgcgcgctgcg
cgtgcggcggtggaccagcgccgcggccgcgccggccgcaccgaaccgggcgtctgctac
cggctctgggacgagccgcagacggcctcgctcgcgccgtacacccagccggagatcctc
agcgccgacctctcctcgctggtgctcgacctcgcgcaatggggcgtcgccgatccttcg
gcgctgtcattcctcgatccgccgccgctgccggcctggaaagaggcgaaaagccttctc
tccgagctcaacgcgctcgatggcgacggccgcatcaccgccgaaggcaaaagcctgcgc
gcgctggcgctgccgccgcggctggcgcgcatgatcgtggattcgcatcgcgtgggcagc
ggcgaagccgccgccgagatcgcggccatcatcaccgagcgcgggctcggcggcgacagc
gtcgatctcgagtaccggcgcgatcagttccgccgcgatcgctcgccgcgcgccgcgagc
gcgcgcgatctcgcgcggcgctgggcttcgcaggtggcggcgtcggagaaggccgcaacc
ggacaggatgatctctcgaccggcctgatgctcgcctacgccttcccggaccgcgtcgcg
cgcaatcgcggcaatggcaccttcgtgctcgccaatggtcgcggcgccgcggtggagcag
acctcgtcgctcgcccgcgcgccctacatcgcgatcggcgagatgacgggcacggcggcg
agcggccgcgttctgctggcagcgccgatcagcgaggacgacatcgagcggcatttcgcc
gagcatatcgagaccgtcgacgagatctccttcgatcgtggcgcgatggcgctgcgtgcg
cggcgcaagcgcgcactgcatgcgatcacattgtctgaggcaacactcgcggtgtcgcct
tcggaggagaccgcgcgcatcttcgcagatgggctgattgccgcaggtctcgaccggttg
ccctggtcgaaggccgcaaagcagtggcgcgaccgcgtgatgtttctgcgcaaggccgag
ggcgacagctggcccgatttgtccgacgacggactgatcgcgcggcgcgacgactggctg
gtgccggcactctacgacaagatcgcactgaaggacatctcggccggcgatctctccgac
gcgctgatggcgctgctgccctgggagatgcgcgcaaggctcgatcgcgaggcgccgacg
catttcgaggcgccgaccggcagcgtgctcgcgatcgactacgaggccgagcaggggccg
accattgcggtgcggctccaggaattgttcgggctcaacacccatccgtcgatcgccgcc
ggcaaggtgccgctggtgctggaattgctgtcgccggcgcaacgcccggtgcaggtgacg
cgcgacctccctggtttctggcgcggcagctacgccgccgtgcgctccgacctgcgcggc
cgctacccgcgccatccctggccggaggatccggcgagtgcgctgccgacccggcgggtc
aagccgcgcgggacctga
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