Bradyrhizobium brasilense: QA636_03520
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Entry
QA636_03520 CDS
T09107
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
bbra
Bradyrhizobium brasilense
Brite
KEGG Orthology (KO) [BR:
bbra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbra03019
]
QA636_03520 (hrpB)
Enzymes [BR:
bbra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QA636_03520 (hrpB)
Messenger RNA biogenesis [BR:
bbra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QA636_03520 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_C
ResIII
HA2_N
Flavi_DEAD
AAA_30
AAA_19
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
WFU64642
LinkDB
All DBs
Position
777834..780302
Genome browser
AA seq
822 aa
AA seq
DB search
MPRQFDSPLPIDAVLDELDRALEGHNAAVLVAPPGAGKTTRVPLALLDAPWAKGKKIIVL
EPRRIAARASAERMAKTLGERAGETVGYRVRFGSKVSRATRIEVVTEGIFSRQILDDPEL
NGVAAVLFDEFHERSLDADLGLALARDAQTGLREDLRILVMSATLDGARVGKLLGDAPVV
ESEGRAFPVETRYVGRKVDAPLERQMAETIATALRADAGSVLAFLPGAAEIRRTQTFLTE
RVHDASVEIVPLFGALDASVQDRAIAPAPKGTRKVVLATSIAETSLTIEGVRIVVDSGLA
RVPRYEPDIALTRLETVRASRAAVDQRRGRAGRIEPGVCYRLWDEPQTASLPAYTAPEIL
SADLSSLVLDLAQWGVSDPAGLAFLDPPPGPALKEARSLLSELGALDGDGRITDEGQSLR
ALALPPRLARMIVDSARFGMGEEAAEIAAVLTERGLGGDSVDLDVRLDQFRRDRSQRASS
ARSMAARWAAQVKSAVGEAKDLSTGVMLAFAFPDRVARNRGNGSFVLANGRGAAVEQTAA
LARLPYIAVAELTGTAASGRILLAAPITQEEIEQRFADQIENVEEVTFDRGAMALRARRR
RSLHAITLSEAPMSLSPSAETARVFADGLIAAGLDRLPWSKHSKQWRDRVMFLRKAEDES
WPDLSDTALAARADDWLVPALYDKTGLKDLSAGDLSDALMALLPWELRARLDREAPTHFE
APTGTQLAIDYEAEQGPTIAVRLQELFGLNTHPSIAKGAVPLVLELLSPAQRPVQVTRDL
PGFWRGSYAAVRSDLRGRYPRHPWPEDPASAMPTRRVKPRGT
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
ttgccgcgccaattcgatagtccgctgccgatcgacgccgtgctcgacgagctcgatcgc
gcgcttgagggccacaacgccgcggtgctggtggcgccgccgggcgccggcaagaccacg
cgcgtgccgttggcgttgctcgatgccccctgggcgaagggcaagaagatcatcgtgctg
gagccgcgccgcatcgccgcgcgcgccagcgcggagcggatggcgaagacgctcggcgag
cgtgccggcgagaccgtcggctatcgcgtgcgcttcggctcgaaggtgtcgcgcgcgacg
cggatcgaggtcgtcaccgaaggcatcttctcgcgccagatcctcgacgatcccgagctc
aacggcgtcgccgcggtgctgttcgacgaattccacgagcgctcgctcgatgccgatctc
gggctggcgctggcgcgcgacgcgcagaccggcctgcgcgaggatctgcggatcctcgtg
atgtcggcaacgctcgacggtgcacgcgtcggaaaactgctcggcgacgcgccggtggtc
gaaagcgaggggcgcgcctttccggtcgagacccgttacgtcggccgcaaggtcgacgcg
ccgctggagcggcagatggccgagacgatcgcgaccgcgctgcgtgccgatgccggctcg
gtgcttgccttcctgccgggcgccgccgagatccgccgcacccagaccttcctcactgag
cgtgtgcacgacgcctctgtcgagatcgtgccgctgttcggcgcgctcgatgccagcgtg
caggatcgcgccatcgcgccggcgccgaagggcacccgcaaggtggtgctggcgacctcg
atcgccgagacctcgctgaccatcgagggcgtccgcattgtggtggactctggccttgcg
cgggtgccgcgctacgagccagacattgcattgacgcggctcgagaccgtgcgggcgtcg
cgcgccgcggtcgatcagcggcgcggccgcgccggccgcatcgagcccggcgtctgctac
cggctctgggacgagccgcagaccgcgtcgctgccggcctacaccgcgcccgaaatcctc
tccgccgatctgtcctcgctggtgctcgacctcgcgcaatggggcgtcagcgatcccgcg
ggccttgccttcctcgatccaccgccgggaccggcgctgaaggaagccagatcgctgctg
tcggagctcggggcgctcgacggtgatggccgcattacagacgaagggcagagcctgcgc
gcgctggcgctgccgccgcggctggcgcgcatgatcgtggattccgctcgcttcggtatg
ggcgaggaggcggccgagatcgccgcggttctgaccgagcgcgggctcggcggcgacagt
gtcgatctcgacgtcaggctcgaccagttccgccgcgaccgttcgcagcgcgcatcgagc
gctcgcagcatggcggcgcgctgggccgcgcaggtgaagtcggctgtcggcgaagcgaag
gatctctccaccggcgtcatgctggccttcgcattcccggatcgggtcgcccggaaccgc
ggcaatggcagcttcgtgctggccaacggccgcggcgccgccgtcgagcagaccgcggcg
ctggcgcggctgccttatatcgcggtcgccgaactgaccggcacggccgcgagcggccgc
atcctgctggcggcgccgatcacccaggaggagatcgagcagcgtttcgccgaccagatc
gagaacgtggaagaggtgacgttcgaccgcggcgcgatggcgctgcgcgcgcggcgccgg
cgttcgctgcacgcgatcacgctgtcggaagcaccgatgtcgctgtcgccctcggccgag
accgcgcgcgtcttcgccgacgggctcatcgcggccgggctcgaccggttgccgtggtcg
aagcactccaagcaatggcgcgaccgtgtcatgttcctgcgcaaggccgaggacgagagc
tggcccgatctgtccgacaccgcgctcgccgcgcgtgccgacgactggctggtgccggcg
ctctacgacaagaccgggctgaaggacctgtccgccggcgacctgtcggacgcgctgatg
gcgttgctgccgtgggaattgcgcgcgcggctcgatcgcgaggcgccgacgcatttcgag
gcgccgaccggaacgcagctcgcgatcgattacgaggccgagcagggcccgaccatcgcg
gtgcggctgcaggagctgttcgggctcaacacccatccctcgatcgccaagggcgcggtg
ccgctggtgctggaactgctgtcgccggcacagcggccggtgcaggtgacgcgcgatctg
cccggcttctggcgcggcagttacgctgcggtgcgttccgacctgcgcggccgctatccg
cgccatccctggccggaagatcccgccagcgcgatgccgaccaggcgcgtgaaaccgcgc
ggcacgtga
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