Bifidobacterium breve 12L: B12L_1222
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Entry
B12L_1222 CDS
T03118
Name
(GenBank) ATP-dependent helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bbre
Bifidobacterium breve 12L
Brite
KEGG Orthology (KO) [BR:
bbre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbre03019
]
B12L_1222
Enzymes [BR:
bbre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B12L_1222
Messenger RNA biogenesis [BR:
bbre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B12L_1222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_19
AAA_22
HA2_C
SLFN-g3_helicase
T2SSE
AAA_30
ResIII
nSTAND3
NACHT
Zeta_toxin
AAA_16
SRP54
AAA_11
ABC_tran
SpoIVA_ATPase
Motif
Other DBs
NCBI-ProteinID:
AHJ15963
LinkDB
All DBs
Position
1460025..1464161
Genome browser
AA seq
1378 aa
AA seq
DB search
MKYEYPAELPVSAARDEIANAVRRSQVVIVSGQTGSGKTTQLPKILLELGRGTHGKQIVH
TQPRRIAARTVAERIASEMGVRLGDEVGYQVRFTDESSPNTRLRVVTDGILLAQIQRDPK
LSQYDTIIIDEAHERSLNIDFLLGYLTALLPQRRDLKLIITSATIDSVKFQEHFAHALHE
KVPVIEVSGRTFPVQVVYEPLGTAPALMREVPGFATGARPGDADYDELASAIAESDADHS
RRRGNADYADDGITDMPTAVARACAELVIHSSHERGPRDILVFASGERDIHEFEAALRHH
YGPRADDMHRPDAIEIMPLFARLSAADQHKVFESHTHQRIVIATNVAETSLTVPGIRYVV
DPGTARISRYSKTAKVQRLPIEPISQASADQRSGRCGRVADGIAIRLYSREDYETRPRFT
EPEILRTSLGAVVLHMLSVGVARTAEDVTNFGFIDPPDMKAVSDGFNELTELKAIGRKRG
EVTLTHTGRQLARIPIDVRLGRMVIEAAKAGSPNLLASVLVVVAFLSLQDPRERPDDKRE
EADRIHNRYADETSDFLTALNIWDRVFQADGDPSNNALRRICRTEYFSWLRMRQWKDLVS
QLRQMCKELKFKVGDPLPSSRPGLEIRQLPLNQQAAHSLCCSWDTDGIHKSMLAGLLSMM
GMQVIREPKASDFAGLSGAARARAMKRAQKMSKNDYQGARGTRFALFPASAVAKKTPSWV
MSTELVETSRLWARYSAAIDPAWAEPLAGQLTRTTYAEPHWSGSRGSAVATARVLLYGLP
IVRDRAVQWGRINPLEARDFLIRQGLVEGDIQQRFSYDEFVGRNRDILEDAADDASRTRQ
LADTVSDEDLFDFYNAVIPNDVTCVADLAKWWKIDHDKQPDLLDFDPAKVERLASSDSVS
LDDYPDHWHTTGSDGQPIDLRLSYVYDPTDPADGVTVHVPLKALSRITPDQFTWNVPGLL
DELILAMIKALPKQLRVQFVPAPDAARTIRDWINEHYPDLPGSGSQQKPNLPPVDEEGTT
VGWPDLAHVFTKAAIATVGAQIHPEVLGPELVERLSAYLRVTFSVEQQLPAGKHPRGRRH
ARGPVKVLGTAKDLKALQREFAAQAEASARQMVKKQAEQAGEQGKLVQQANLLHKAGATT
ESRATMLWRGALDALRLPGERISSRWLGTEALMLAAAPYKSTKELVEDLQLATVKRLLPN
VDKLADDEALANAVLDIREVYEDTVYQVAHDVIGIMKSYADVDKATSGKADLPMLSVLQS
IRDHIATLVYPGFIGRTPPDALKSLSRYLKADVSRLNKAKTDKNRDVKWAWQADEAKQLV
DKALARAKAEPAGPKHEALMQQAEQARWMLEEFYVSLWAQELGTKGPASLNRIKKALF
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatgagtatcctgccgaacttcccgtatccgccgcacgtgatgagatagccaac
gctgtccgtcgttcacaagtcgtcattgtttccggtcagaccggttccggcaaaaccacg
cagctgccgaagattctgttggaactcggccggggcacacacggcaagcagatcgtgcat
acccagccccgccgtatcgccgcacgcacggtggccgaacgcatcgcctccgaaatgggc
gtacgtctgggcgatgaagtcggctatcaggtgcgcttcaccgacgaaagctccccgaat
acgcgtctgcgcgtggtgaccgacggtattctgctcgcccagattcaacgcgatccgaag
ctcagccagtatgacacgatcatcatcgacgaggcccacgagcgcagcctgaacatcgac
tttctgctcggatatctaacggccctgctcccccagcgtcgcgacctgaagctcatcatc
acctccgcaaccatcgattcggtgaagttccaagaacatttcgcgcacgcattgcacgag
aaagtaccagtgatcgaggtgtccggccgcaccttccctgtgcaggtggtgtacgaaccg
ctcggcaccgcacccgcactgatgcgtgaggtgccgggctttgcgaccggcgcccgcccc
ggagacgccgactatgacgagctggcgagcgccatcgccgaatccgatgccgatcattcc
cgcagacgcggcaatgccgattacgccgacgacggcatcaccgacatgcccacagcggtg
gcccgagcctgtgccgagctggtcatccattcctcccatgagcgcggcccgcgtgacatt
ctggtcttcgcttccggcgagcgcgacattcacgagttcgaggcagctctgcgtcaccat
tacggcccgcgagccgatgatatgcaccgccccgacgccattgagatcatgccgttgttc
gcgcgcctgtcggccgccgaccagcacaaggtgttcgagtctcacacccatcagcgcatc
gtcatcgccaccaacgtggccgagacctcgctgaccgtgcccggtatccgttatgtggtg
gatcccggcaccgcgcgcatctcccgttattcgaagaccgctaaggtgcagcgtctgccc
atcgagccgatcagccaggccagcgccgatcagcggtccggccgatgcggacgtgtggcc
gacggcattgccatccggttgtattcgcgtgaggattacgagacccgtccccgtttcacc
gagccggagatcctgcgaacctcgctaggcgcggtggtgctgcacatgctctccgtgggc
gtggcccgtacggcggaagacgtcacgaacttcggtttcatcgacccaccggacatgaag
gctgtgtccgacggattcaacgagctgaccgagctgaaggccataggccgcaagcgtggc
gaggtgacgctcacccataccggtcgtcagctggcgcgtattcccatcgacgtgcgtctg
ggccgcatggtcatcgaagcggccaaggccggttcaccgaatcttctggcttcggtgctc
gtggtggtggcgttcctcagcttgcaggacccccgcgagcgcccggatgacaagcgtgag
gaagccgaccgcattcataaccggtatgcggatgaaaccagtgattttcttacggcgttg
aatatctgggatcgcgtattccaggcggatggcgatccgagcaacaatgcgttgcgccgt
atctgcagaaccgaatatttcagctggctcaggatgcgccagtggaaggatctggtctct
cagctcaggcagatgtgcaaggagctgaagttcaaggtcggcgacccgttgccgtcttcc
cgccccggtttggagattcgtcagctgccattgaatcagcaggccgcgcattcgctgtgc
tgttcgtgggatacggacggcattcataaatcgatgcttgccggcttgctgtccatgatg
ggcatgcaggtgatccgagagcccaaggcttccgactttgcgggactcagtggagcggct
cgtgcccgcgcgatgaaacgcgcccagaagatgtcgaagaatgactatcaaggtgcgcgc
ggcactcgtttcgccttgttcccggcctccgccgtagccaagaagaccccttcatgggtg
atgagcaccgaactggtggagacctctcgtctgtgggcccggtattcggccgccattgac
ccggcatgggccgaaccgctggccggccagctaacccgcaccacgtatgcagaaccgcat
tggtccggctcgcgcggctccgccgtggccaccgcacgcgtcttgctctatggtctgccg
attgtgcgggatcgtgccgtgcagtgggggcgcatcaatccgcttgaggcccgtgatttc
ctgattcgtcaaggcttggtggaaggtgacattcagcagcgcttcagctacgacgaattc
gtgggcaggaatcgcgacattcttgaggatgccgccgatgatgccagccgcacccgtcag
ctggcggacaccgtgtccgacgaggatctgttcgatttttataatgccgtcattcccaat
gatgtgacctgtgtggccgatttggcgaaatggtggaagatcgaccacgataagcagccg
gatttgctggatttcgacccggccaaggtggaacgcctggcatccagcgattcggtcagt
ttggatgattaccccgaccattggcataccacgggttccgatggccagcctatcgacctg
cgcctgagctacgtgtacgacccaaccgacccggccgatggcgtcaccgtgcatgtgccg
ctcaaggcactctcgcgcattacccccgaccagttcacatggaatgtgccgggcttgttg
gatgagctgattctggcgatgattaaggcactgcccaagcagctgcgcgtccagttcgta
ccggctccggacgccgcacgcacgattcgcgattggattaacgaacattaccccgatttg
ccgggttccggctcgcagcagaaaccgaatctgccaccggtggatgaggaaggcaccact
gttggctggcccgatctggcgcacgtgttcaccaaggccgccatcgctaccgtgggagcg
cagattcatcctgaggtgttgggaccggaattggtcgagcgtctgtccgcgtatttgcgg
gttacgttctcagtggagcagcagttgccggccggcaaacatccgcgtggccgccgtcac
gcacgcgggccggttaaagtgctgggcaccgccaaagatctgaaggcattgcaacgcgaa
ttcgccgcgcaggcggaggcttcggcccgtcagatggtcaagaaacaggccgaacaggcc
ggcgagcaaggcaagctggtgcaacaggcgaatctgctgcataaggcgggtgccactacc
gagtcgagggccacgatgctatggcgtggcgcattggatgcgttgcgcttgccgggcgaa
cgcatttcgtctcgttggctgggcaccgaagcgttgatgctggctgccgccccctacaag
tccaccaaggaattggttgaggatttgcagctggccacggtcaagcgtctgctgccgaac
gtcgacaagctcgcagatgatgaagctctggccaacgcagtgctcgacatacgcgaagtg
tatgaggataccgtgtaccaggtggcgcatgatgtcatcggcatcatgaagtcttatgcc
gacgtggataaggccacttccggcaaggccgatctgcccatgctttcggtgttgcagtct
atccgtgaccatatcgccacgcttgtctacccaggttttatcggccgcactcccccggat
gcgctgaaatcattgagccgttatctgaaggcggatgtgagccgtctgaacaaggcgaaa
accgataagaaccgtgacgtcaagtgggcatggcaggccgacgaggccaagcaattggtc
gataaagcattggcacgggcaaaagccgaaccggccggcccgaagcatgaagcactgatg
cagcaggccgagcaggcgcgttggatgcttgaagaattctatgtgtctctctgggctcag
gaactcggtaccaaggggccggcatcgctcaaccgcatcaagaaagcgctgttctag
DBGET
integrated database retrieval system
