Bubalus bubalis (water buffalo): 102391074
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Entry
102391074 CDS
T05912
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X2
KO
K16617
collagen type XIII alpha
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102391074 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bbub00536
]
102391074 (COL13A1)
Glycosaminoglycan binding proteins [BR:
bbub00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102391074 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
102391074
NCBI-ProteinID:
XP_044798138
EnsemblRapid:
ENSBBUG00015013072
LinkDB
All DBs
Position
4:145236268..145389948
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AA seq
717 aa
AA seq
DB search
MVAERSRKATAAGARGPAELGAPGTVALAVAPAERCARLPSPGSCGLLALALCSLALSLL
AHFRTVELQARVLRLEAERGEQQMEPAILGRVNQLLDEKWKLHSRRRRETLKTSPGCHCP
PGPPGPAGRPGLPGDKGAIGMPGRVGGKGQPGEKGAPGDAGMSIIGPHGPPGQPGTRGFP
GFPGPIGLDGKPGRPGPKGEMGPQGQKGEKGQCGEYPHREHLSGSLAALRSNQIIILKGE
QGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGM
PGMPGKHGAKGEPGIPGAKGEKGAAGSPGPLGLLGQKGEKGDAGNSIEGGRGEPGLPGPP
GPPGPKGETGADGQPGPPGQQGDKGEPGPAGEQGPTGPKGSKGETGKGEMVDYNGNINEA
LQEIRTLALMGPPGLPGQIGPPGAPGIPGEKGEIGLPGPPGLDGEKGPRGKPGDVGPPGP
QGPPGKPGPAGMKGEDGLPGSPGEKGEKGETGQPGPPGLDGPTGEKGEPGDQGRPGATGL
PGPIGLPGFIGEKGEPGEKGDPGTEVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEK
GVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAA
GLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggtagcggagcgctctcgcaaagcgacagccgccggtgcccgcggccctgcggagctg
ggcgcacccgggacagtggcgctggcggtggcgccggcggagcgctgcgcgcggctgccg
agcccggggtcgtgcgggctgctggcgctggccctctgctcgctggcgctcagcctgctc
gcccactttcggacggtcgagctgcaggcccgggtgctgcgcctggaagcggagcgtggg
gagcagcaaatggagccggctattttgggacgagtcaaccaactgctggatgagaaatgg
aagctccactcacggaggcgccgggagaccctgaagacatccccaggatgtcactgcccg
ccagggcctcctggtcctgctggaagacccggcctcccgggggacaaaggtgccattggg
atgcctggacgtgtgggaggaaagggccaaccaggcgagaagggcgccccaggagatgcc
ggcatgtccatcattggtccccacggcccccctggtcagccaggcacccgaggttttcca
ggatttccgggtcccattgggctcgacggcaaaccgggccggccgggaccaaagggggag
atgggacctcaaggacaaaagggagaaaagggtcagtgtggcgagtacccacaccgggag
cacctaagtggctctctagcagctctgcgctccaaccagataattattctgaagggtgaa
cagggccaggctggcatccaaggcccaccagggccaccaggccctcccggaccgagtgga
cctctggggcacccaggactgccagggcccatggggccaccaggcttacctgggcctcct
ggaccaaagggagacccagggatccagggctaccacggccggaagggagaacggggcatg
ccagggatgccgggcaaacacggagcaaagggtgaacctgggatcccaggagccaagggt
gagaagggggctgcggggtcccccgggccactcggcctcttggggcagaagggagaaaaa
ggcgatgctggcaactccattgaaggaggcagaggggagcccggtctcccagggcctcct
ggacccccagggccaaagggggaaactggagcagatggccagccaggccccccaggacag
caaggagacaagggggagcctggaccagctggagaacagggacctactggccccaagggc
tccaagggcgaaactgggaaaggagagatggtggactacaacggcaacatcaacgaggct
ctccaggagatccggacactggccttgatggggccccctggtcttcctgggcagatcggc
ccacccggagctccagggatcccaggcgagaagggggagattggactgccaggccctccc
ggactcgatggggaaaagggacctcgaggcaaaccaggagatgtgggccctcctggtccc
caaggccccccaggaaagcctgggcctgcaggaatgaagggagaagacggcctcccgggg
agcccaggagagaagggggagaaaggggagacggggcagccgggaccaccgggtctagac
ggcccaactggggagaaaggagaaccaggtgaccaagggagacccggagcgactggactt
cctggcccaatcgggctcccaggatttataggagagaaaggagaaccaggggagaagggt
gacccaggaacggaggttcctgggccaccagggccagaggggcctcctggacctccgggg
ctccaaggcgttcctggaccaaagggggaagcaggactagacggagcaaaaggagaaaag
ggcgtccagggagaaaaaggagaccgaggtcctctgggattacccggagcttcaggtttg
gacggcaggcctgggccaccgggtactccaggaccaatcggagttccaggcccagcggga
ccaaagggagagaggggcagcaaaggtgaccctgggatgacaggaccaacgggagcagct
gggcttcctggtttacacggaccacccggggacaaaggaaaccggggggagagggggaag
aaaggctctagagggcctaagggggataagggagaccaaggagcgcctggattagatgcc
ccctgtccattgggtgaagatggcttgccagtccagggctgctggaacaagtga
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