Bubalus bubalis (water buffalo): 102400882
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Entry
102400882 CDS
T05912
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4 isoform X1
KO
K07573
exosome complex component CSL4
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102400882 (EXOSC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102400882 (EXOSC1)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
102400882 (EXOSC1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
102400882 (EXOSC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
102400882
NCBI-ProteinID:
XP_006061227
EnsemblRapid:
ENSBBUG00015014003
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All DBs
Position
23:complement(18865981..18872736)
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AA seq
195 aa
AA seq
DB search
MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKTSENGALPVISVMRETE
SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK
SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK
EFRKVARVQPEFLQT
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggcgccacccgtgaggtactgcatccccggcgaacgtctgtgtaacttggaggagggc
agcccgggcagcggcacctacacacggcacggctacatcttttcgtcgcttgctggctgc
ttgacaaagaccagcgagaacggcgcgcttcctgtcatatctgtgatgagagaaacagag
tcccagttactgccagatgtaggagctattgtaacctgtaaggtctccagcatcaattca
cgctttgccaaagtacacatcctgtatgtggggtccacaccacttaagaactcttttcga
ggaaccatccgcaaagaagacgtccgagctactgaaaaagacaaggttgaaatttataag
agtttccgcccaggggacatcgtcttggccaaagtgatctccctaggtgatgcacagtcc
aactacctgctaaccaccgcagaaaatgagctgggagtggtggtggcccacagcgaatcc
ggtgtccagatggtccccatcagctggtgtgagatgcagtgcccgaagacccacaccaag
gaattccggaaggtggcccgagtacagcctgagttcctgcagacctaa
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integrated database retrieval system
