Bufo bufo (common toad): 121004197
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Entry
121004197 CDS
T07950
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
bbuf
Bufo bufo (common toad)
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bbuf00536
]
121004197 (COL13A1)
Glycosaminoglycan binding proteins [BR:
bbuf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121004197 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
121004197
NCBI-ProteinID:
XP_040292284
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Position
6:complement(257134568..257398106)
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AA seq
719 aa
AA seq
DB search
MEGKEEWRAAVFSRSCRTMPCRTEDCGKCSRFPALLGCGFALLSVFSLLLSLLVLCRTSD
LQSRVSDLEKFRYTHLSALVSADQRETAILGRVDQLLEEKLQAHLPKLREVRDTSVKCLC
PPGPPGARGKRGQNGESGPPGPIGQPGIPGDKGGLGMPGRTGIKGHPGEKGASGESGMSV
IGPRGPPGQPGTRGFPGFPGPIGLDGKSGHPGQKGEKGDLGPPGPKGHPGSTGVKGEKGH
CADYSHRLLPAMINTVRAVQPTIVRKRIFQGEQGQAGIQGPPGLPGPPGPSGPPGSQGDP
GLPGVAGSPGKAGESGKPGKDGKDGKGLPGPPGPQGEPGAAGIPGRKGERGMPGMPGKHG
AKGEPGASGVKGEKGDLGNALSGIKGEPGNPGLPGPPGPKGEAGAIGHPGISGQQGEKGT
PGIKGEQGPFGLRGPKGEPGKSSLVEYNSNLSEALQGPPGPPGAPGLPGQKGEIGLPGAP
GHDGDKGPRGKPGEAGLPGLPGQDGLQGPKGDTGPRGLQGPKGDKGDVGQTGSHGLDGPT
GEKGEPGDQGPLGPSGLPGPIGLPGLTGEKGETGEKGDSGNTVSGPPGPPGVPGPVGPPG
LPGQKGEVGESGMRGEKGSPGEKGDKGPLGLPGTPGPIGVPGPAGPKGERGNKGDPGVTG
PTGPVGPPGPPGEKGSRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggaggggaaggaggagtggagagctgctgtcttctctaggagttgtagaaccatgccc
tgtaggacagaggactgtgggaagtgcagcaggttccctgcactcttgggatgtgggttt
gccttattatcagtgttttccttactcctcagtctcctggttctctgcagaacttcagat
ttacagtccagggtttctgatttagagaagttcagatacactcacttatctgccttagtc
tctgcagaccaaagggagacagctattttgggaagagttgaccaactgctggaagagaaa
ctgcaagctcatctgccaaaacttagagaagtaagagacacaagtgttaaatgtctgtgt
ccgcctggtcctcccggagcaaggggcaaaagaggacaaaatggggagtcagggccacct
ggccctattggacaacctggtattccgggagataaaggtggtcttgggatgccaggacgg
acgggaataaagggtcatcctggcgagaagggagcatcgggagaatcgggaatgtctgtt
ataggaccccgtggccctcctggccagcctggaactcgaggttttcccggattcccaggc
ccaataggattagacggcaagtctggtcatcctgggcaaaaaggggaaaaaggtgatctg
ggtcctcctggcccaaaaggacatccaggttctacaggtgttaaaggagagaagggtcac
tgtgcagattactcccacaggctgttgcctgctatgattaatacagtgcgggcggttcag
ccaacgatcgtaaggaagcgcatcttccagggtgaacaaggacaagcgggaatccaagga
ccaccagggttacctgggccacctggaccttctgggccaccaggatctcaaggagatcca
ggattgcctggggttgcagggtcacctgggaaagcaggggagtcgggtaaacctggaaaa
gatggaaaagatggaaaaggattgcctggaccaccggggccacagggagaaccaggggct
gcaggaattccaggaaggaagggagaaagaggcatgccggggatgccagggaaacatgga
gcaaagggtgaacccggagcttcaggagtaaagggagaaaaaggagacttgggaaatgca
ctcagtggaattaaaggagaacctggtaacccaggcctgccaggacctccaggaccaaag
ggagaagctggtgctattggccacccaggaatttcaggccagcagggtgaaaagggaact
ccaggaattaagggagaacaaggcccttttggacttcgaggtcctaagggagaacctggg
aaatccagccttgtggaatataatagcaatctcagtgaagcactacagggtcctcctgga
cctccaggagcaccaggtttaccaggacaaaagggtgaaattggattacctggtgctcct
ggccatgatggagacaagggacctcggggcaaacctggtgaagcaggacttcctggtctg
ccaggacaggatggacttcaaggaccaaagggcgacacaggtcctagaggattacaaggg
cctaaaggagataaaggggatgtaggacaaacaggttcacatggtcttgatggcccaact
ggagagaaaggagaaccaggtgaccaaggacctctaggaccctcaggtcttcctggccca
attgggcttccaggacttactggagaaaaaggagagactggtgagaaaggagattctgga
aacacggtgtctgggcctcctggccctccgggtgttcctgggcctgtaggccctcctgga
cttcctggacaaaagggtgaagtaggagagagtggtatgagaggagaaaagggcagcccg
ggagagaaaggagacaaaggtcctttgggtttaccagggacccccggaccaattggtgtt
ccaggaccagcgggaccaaaaggagagaggggcaataaaggagatcctggtgttacagga
ccaactggaccagtggggccacctggacctcctggtgagaagggaagtcggggggaaagg
gggaagaaaggctctagggggcctaaaggggataagggagaccaaggagcgcctggatta
gatgcaccctgcccattgggagaagatggtttaccagttcaaggctgctggaataagtga
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