Paraburkholderia caribensis: K788_0002386
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Entry
K788_0002386 CDS
T04141
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
bcai
Paraburkholderia caribensis
Pathway
bcai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bcai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K788_0002386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcai03400
]
K788_0002386
Enzymes [BR:
bcai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K788_0002386
DNA repair and recombination proteins [BR:
bcai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K788_0002386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
UvrD-helicase
SH3_13
Helicase_RecD
Viral_helicase1
SLFN-g3_helicase
RecD_N
DEAD
AAA_22
T2SSE
CbiA
MukB
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ALL64882
UniProt:
A0A0P0R962
LinkDB
All DBs
Position
1:2216330..2218342
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AA seq
670 aa
AA seq
DB search
MSTFDQPLPDVEVNVPTPADFSTALAEGFARRVSALAQRGGASADSVRWAARGAFAASRA
TSEGHVCVPLDELAQRYDAEVAEVRDALLASGVASDGVQPAHALRPLVVDGQGRLYLARY
YDYERRLAQSLVGHARGADRDAVSAGMSSEGLRDRLLRYFGEPQDDQIDWQRVAAVMALS
GRLTIVSGGPGTGKTTTVVGVLACLLDARADLRIALAAPTGKAAQRMQEALLARASSLPQ
ELAARLPQTSFTLHRLLGTGPNGRFRHHRDNPLPFDVIVIDEASMIDVAMATHLFDALAP
DTHLVMLGDKDQLAAVEAGAVFAELSAQPAFTANGVGSIATALGIDVRRLRDALPTGRDD
DASPGDTQPLFDDLFGMPSDLPSSMPDAQPAPLADCVVWLERNYRFGLESAIGRLSLAIR
RGAAQDALDVLRLDPAEPCAAAFHQDTDAVPAERTIQRLAAGFAPYADALATALAGGAAG
VASHALALFDALNRFRILCATRLGSRGVEQMNTAMAAQVRRIARVPMAVGAQWFAGRPIM
VTRNDYALGLFNGDIGIALPGADGALRVFFRGADGSLRAVSPAALPPHDTAFALTVHKSQ
GSEFEHAVLMLPSTFSRVLSRELVYTAVTRARERVEVVGSRAVLMRAIATPTQRDSGLAA
RILEAMRNDG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagcacattcgatcagccgttgcccgatgtcgaggtcaatgtccccacgcctgccgat
ttcagtacggcgctcgcggaaggcttcgcgcggcgcgtgagcgcgcttgcgcaacgcggc
ggcgcgtcggcggacagcgtgcgctgggccgcgcgcggcgcgttcgcggcgagccgggcg
acatcggaagggcacgtgtgtgtgccgctcgacgaactcgcgcagcgctacgacgccgag
gtcgcggaagtgcgcgacgcattgctcgcgagcggtgtcgcaagcgacggcgtgcagccg
gcgcatgcgttgcgcccgctcgtcgtcgatgggcaagggcggctttatctcgcgcgttac
tacgattatgaaaggcggcttgcgcagtcgctcgtcggacatgcgcgaggcgcggatcga
gatgccgtgtcggcgggcatgtcatctgaaggcttgcgcgacaggttgctgcgttatttc
ggtgaaccacaggacgaccagatcgactggcagcgcgtggccgccgtgatggcgctgtcc
gggcgactgaccatcgtcagtggcggtccgggcacgggcaagacgaccacggtcgtcggc
gtgctcgcctgtctgctggacgcgcgcgcggacttgcgtatcgcgctcgccgcgccgacg
ggcaaggccgcccagcggatgcaggaggcgctgctcgcgcgcgccagttcgttgccgcag
gaactcgccgcgcgtctgccgcagacgtcgtttacgttgcatcggttgctgggcaccggg
ccgaatgggcgcttccgtcatcatcgcgacaacccgttgccgtttgacgtgatcgtgatc
gacgaggcttcgatgatcgacgtcgcgatggcgacgcatctgttcgatgcgctcgcacct
gacacgcatctcgtgatgctcggcgacaaggatcaacttgcggccgtcgaagcgggtgcc
gtgttcgccgagttgagcgcgcaacccgcgttcacggcgaacggcgtcggctcgatcgcg
acggcactgggaatcgatgtacgccgtttgcgcgatgccttgcccacgggccgcgacgac
gatgcgtcgccgggagacacccaaccgcttttcgacgacctgttcggcatgccgtccgac
ctgccgtcttccatgccggatgcgcaaccggcgccgcttgccgactgcgtcgtatggctc
gaacgtaactatcgcttcgggctggagtcggcgatcgggcggttgtcgctcgcgatccgg
cgcggcgccgcgcaggacgcgctcgacgtgctgcgcctcgatcccgccgagccctgcgcg
gccgcatttcaccaggacaccgatgccgtgcctgccgagcgcacgatccagcggctcgcg
gccgggttcgcgccctacgcggacgcgctcgcgacggcgctcgccggcggcgcggcgggc
gtggcctcgcacgcgttggcattgttcgacgcgctcaatcgcttccgcatcctgtgcgcg
acgcgactcggttcgcggggcgtcgaacagatgaatacggcgatggccgcgcaggtgcgg
cgcatcgcgcgcgtgccgatggccgtcggcgcgcaatggttcgcgggacggccgatcatg
gtcacgcgcaacgactatgcgctgggtctgttcaatggcgatatcggcatcgcgctgccc
ggcgcggacggcgcgctgcgggtatttttccgtggcgcggacggcagcttgcgcgcggtg
tcgcctgcggcgctgccgccgcacgacacggccttcgcgctcacggtgcacaagtcgcaa
ggctcggagttcgaacacgcggtgctcatgctgccgtccacgttcagccgggtgctgtcg
cgcgaactcgtttatacggccgtcacgcgggcgcgcgagcgggtcgaggtggtcggctcg
cgggccgtgctgatgcgtgcgatcgccacgccgacgcagcgcgactccgggcttgccgcg
cgaatcctcgaggcgatgcgaaacgacgggtga
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