Cytobacillus dafuensis: FSZ17_20815
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Entry
FSZ17_20815 CDS
T06982
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bda
Cytobacillus dafuensis
Pathway
bda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSZ17_20815 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bda03019
]
FSZ17_20815 (rnr)
03016 Transfer RNA biogenesis [BR:
bda03016
]
FSZ17_20815 (rnr)
Enzymes [BR:
bda01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FSZ17_20815 (rnr)
Messenger RNA biogenesis [BR:
bda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FSZ17_20815 (rnr)
Transfer RNA biogenesis [BR:
bda03016
]
Prokaryotic type
tRNA degradation factors
FSZ17_20815 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
CsrA
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QED49505
UniProt:
A0A5B8Z8R6
LinkDB
All DBs
Position
complement(4366301..4368640)
Genome browser
AA seq
779 aa
AA seq
DB search
MENNIQQIMDKLLNHMKDEAYKPLTVQEIEAAFGIVDSSDFKDFVKALVLMEEKGLVVRT
RSNRYGLPEKMNLIRGKLSGHAKGFAFVIPEEPGMDDIFIPPNETNNAMHGDIVLARVSS
ETSGQRREGTIVRILERGIQQIVGTYTESKHFGFVLPDDKKFASDIFIPKNASLGAVEGH
KVVVKLTTYPEGRKSAEGEVIQILGHKNDPGVDILSIIHKHSLPMAFPDEVLDQANNTPE
TIAEKDLENRRDLRNETIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVTHYVTEDS
SIDREASDRGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEITSTGEVVSHEI
FQSVIKTTERMTYSDVNKILEDQDEELLKRYEPLVPMFQLMGELALILREKRMKRGAIDF
DFKEAKVIVDEEGKPSDVVLRERSTAERLIEEFMLAANETVAEHFHWLDVPFIYRIHEDP
KEDKLRRFFEFIINFGYIVRGTANSVHPRALQEIIEEVQGKPEEMVVSTVMLRSMQQAKY
YPESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLIEGKVDPATREKWNALLPDIAE
HSSNMERRAVDAERETDELKKAEYMEDKIGQEYDGIISSVTNFGMFVELPNTIEGLIHVS
YMTDDYYRYDERHLAMIGERTGNVFRIGDEITVRVVKVNKDERSIDFEIVGMKGTPRRRE
SRELPKIIRTGSSERKPRKGKSEQGQGNKKNGNSSGKSPRKKKKFFENAPKAKRKNKKR
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataatattcaacaaattatggataagctcctcaatcatatgaaggatgaggca
tacaagcccctgactgtacaggaaatcgaggctgcattcggaattgtggattcatccgac
tttaaggattttgttaaagcattggttttgatggaggaaaaaggtcttgtcgtgcggaca
agaagcaatcgttacggattgccggaaaaaatgaatttaatccgaggaaagttatcaggg
catgcaaagggatttgcttttgttataccagaagagccaggtatggatgatatttttatt
ccaccgaatgaaacaaataacgccatgcacggagatatcgttcttgctcgtgtcagctca
gaaacctcaggtcaaagaagagaaggcacgattgtccgtatactcgagcgcggcatccaa
cagattgttgggacatacacggagagcaagcattttggctttgtcttgccagatgataaa
aaattcgctagcgatatttttattccgaaaaatgcttccctaggtgctgttgaaggacat
aaggtagttgtgaagctgacaacttatccggaaggaaggaaaagtgctgaaggggaagtt
attcaaatccttggtcataaaaatgatccgggtgtggacatcctttcgattattcataag
catagtctgccaatggcttttccagatgaagtgcttgatcaggcaaataacacgcctgaa
acgattgcagaaaaggatttggaaaaccgccgtgatttaagaaatgaaacaattgtcacg
attgatggcgcggacgcgaaagatttggatgatgcggttaccgttacaaaattagaaaac
ggaaattacaagcttggtgtacatattgctgatgttacacattacgttacggaagattca
tcgattgatcgggaagcttctgacaggggaacgagtgtctatttggttgacagggtgatt
ccaatgatccctcaccgcctgtcaaatggaatttgttcattaaatccaaaagtagacagg
ctgacattatcctgtgaaatggagattacctctactggagaggtcgtttctcatgaaatc
ttccaaagtgttattaagacgactgagcggatgacgtattcagatgtgaataaaatttta
gaggatcaagatgaggagctcttgaaacggtatgagccgcttgtaccgatgtttcaatta
atgggagaacttgctctaattttacgagaaaagcggatgaaacgcggcgcgattgatttt
gattttaaagaagcaaaagttattgtggatgaagagggaaaaccaagtgatgtcgttctt
cgcgagcgctctactgctgaaagactcattgaagaatttatgcttgcagctaatgaaacg
gttgcagagcattttcattggctggatgttcccttcatctatcgaatccatgaagatccg
aaggaagataagctgagaaggtttttcgaatttattattaacttcggttatatcgttaga
ggaacagctaattccgtgcatcctcgtgcattgcaggaaattattgaagaggtgcagggc
aagcctgaagaaatggtcgtttcaacagtaatgctgcgttcaatgcagcaggcgaaatat
tatccagaaagtcttggccacttcggactctcaacggaattctatacgcattttacttcg
ccgattcgtcgctatccagacttaattgtccatcgattaatccgaacttacttaatcgaa
gggaaggttgatcctgcaacacgcgaaaaatggaatgcccttcttcctgatattgctgag
cactcctccaatatggagagaagagcggttgatgcagagcgggaaacggatgagctgaaa
aaagcggaatatatggaagacaaaattgggcaagaatacgatggaattattagctctgtt
acgaactttgggatgtttgtcgagctgccgaatacgattgaaggcttgatccatgttagc
tatatgacggatgattactaccgttatgatgaacgtcatttagcgatgattggggagcgt
acaggcaatgtcttccgaatcggtgacgaaattacggttagggtcgtaaaagtaaataaa
gatgagcgctcgattgattttgaaattgtcggtatgaagggaacacctcgcagacgggaa
tcaagagaattgccgaagattattcgcacaggcagcagtgagcgcaagcctcgaaaagga
aagtctgaacagggtcaagggaataaaaagaatggcaacagttcaggaaaaagcccgaga
aagaaaaagaaattttttgaaaacgcaccaaaagccaagcgaaaaaataaaaagcggtag
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