Burkholderia diffusa: WI26_07065
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Entry
WI26_07065 CDS
T04698
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bdf
Burkholderia diffusa
Pathway
bdf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WI26_07065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdf03019
]
WI26_07065
03016 Transfer RNA biogenesis [BR:
bdf03016
]
WI26_07065
Enzymes [BR:
bdf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
WI26_07065
Messenger RNA biogenesis [BR:
bdf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WI26_07065
Transfer RNA biogenesis [BR:
bdf03016
]
Prokaryotic type
tRNA degradation factors
WI26_07065
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
HTH_12
CSD
Motif
Other DBs
NCBI-ProteinID:
AOI57380
UniProt:
A0A1B4BRT8
LinkDB
All DBs
Position
1:1548500..1550965
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AA seq
821 aa
AA seq
DB search
MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNGEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRIGHDILITQNVKKAKVGQVV
VVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSQPALDEAAALPDKV
RPADLRFRVDLRDVPLVTIDGEDARDFDDAVYCEPTKVGRGDGFRLIVAIADVSHYVQPG
NGLDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMVITARGEIKAYQ
FYPAVIHSAARLTYTEVAAVLSNTKGPEAARRADLLPHLQDLYGVYKSLFAARQKRGAID
FDTTETYIVCNSQGKIEQIVPRQRNDAHKLIEECMLAANVCAADLLKRNKHPGLYRVHAG
PTPEKLENLRAFLRGMGLSLGGGDKPHASDYAALMAQIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYSILSGKKYVPKAPEGFELNTALSPR
ARAMQQADDEARGRSRSNTAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTSFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRDTPVKAPRPAPAPAATGNGNGNDRGPRVRSLPPVEEAAPRR
KKAASAPTAAVKEARAARAAKKKGGVAAKTAAKKTHARKKY
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaatatccgtaccccattccgagccgtgaagaaattctcggcgtgctgcgtacg
agcgacgcgccgctggcagccaacgacatcgccgaagcgttgtcgatcaagcgccaggag
cgcgaagggttcttccggcgtgtcgccgcgatggaacgcgacggtcagatccgcctcgac
aagcgcggccactaccaactcacccacccgtcgaacttcgtcgctggccgcgtgcagggg
catcgcgacggctacgggttcgtgatccgcgacgacggccaggacgacctgttcttgccg
aacggcgaaatgcagaaggtcatgcacaacgaccgcgtgcttgcgcggatcgtcggctac
gatcgccgcggccgcccggaaggccatgtcgtcgaagtcaccgagcgcgcgaacaagcgc
gtgatcggccgcctgctcaacgagaacggcgcgttgatcgtggctcccgaagacaagcgc
atcggccacgacatcctgatcacgcagaacgtgaagaaggcgaaggtcgggcaggtcgtc
gtcgtcgagctgaccgacttcccgagtcgccattcgcaaccgctcggccgcgtcgtcgaa
gtgctcggcgacatcgacgatccgggcatggaaatcgagatcgcggtgcgcaagtacggc
gtgccgcacgaattcagccagccggcgctcgatgaagccgccgcgctgcccgacaaggtg
cggccggccgacctgcgcttccgcgtcgatctgcgcgacgtgccgctcgtgacgatcgac
ggcgaggatgcccgcgatttcgacgacgccgtttactgcgagccgaccaaggtcggtcgc
ggcgacggcttccgcctgatcgtcgcgatcgccgacgtgtcgcactacgtgcagccgggc
aacggcctcgatgccgacgcactggagcgcagtacgtcggtctatttcccgcgccgcgtg
atcccgatgctgccggagaagctgtcgaacgggctgtgctcgctgaatccgcaggtcgac
cgctgcgtgctcgcgtgcgacatggtgattaccgcgcgcggcgagatcaaggcttaccag
ttctatccggccgtgatccattcggccgcgcgcctgacgtacaccgaagtcgccgccgtg
ttgtcgaacacgaaggggccggaggcggcgcgccgcgcggatctcctgccgcacctgcag
gatctgtacggcgtctacaagtcgctgttcgccgcacgccagaagcgcggcgcgatcgat
ttcgacacgaccgagacgtacatcgtctgcaactcgcagggcaagatcgagcagatcgtg
ccgcgccagcgcaacgatgcgcacaagctgatcgaggagtgcatgctggccgcgaacgtc
tgcgcggccgacctcctgaagcgcaacaagcatccggggctgtaccgcgtgcacgcgggc
ccgacgccggagaagctcgagaacctgcgcgcgttcctgcgcggcatgggtctgtcgctc
ggcggcggcgacaagccgcacgcgagcgactacgcggcgctgatggcacagatccgcgac
cggcccgacgcgcagatgctgcagccgatgctgctgcgctcgatgcagcaggccgtctac
agtccggacaacatcggtcacttcggtctcgcgtatgaagcgtacgcgcacttcacgagc
ccgatccgccgctatcccgatctgctcacgcaccgcgcgatctactcgatcctgtcgggc
aagaaatacgtgccgaaggcgccggaaggcttcgagctgaacaccgcgctgtcgccgcgc
gcccgcgcgatgcagcaggccgacgacgaagcacgcggccgttcgcgctcgaacacggcg
atctgggaggaactcggcctgcactgctcggcgaacgagcgccgcgcggacgaagcgtcg
cgcgacgtcgaggcctggctcaagtgctacttcatgcgcgacaagctcggcgaggagtac
ggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtgcagctcgatacgctgttc
atcgaagggctcgtgcacgtcacggaactcggctcggactacttccagtacgacgagatc
aagaacgagctgcgcggtgagcgcaccggcatccgctatcggctgtccgatcgcgtgcgc
gtgcaggtgagccgcgtcgatctcgacgcgcgcaagatcgacttccgcctcgtgcgcgac
acgccggtgaaggcgccgcgtccggcaccggcgccggctgccacaggcaacggtaacgga
aacgatcgcggcccgcgcgtgcgatcgttgccgccggtggaagaggccgcgccgcgtcgc
aagaaggcagcgagcgcgccgaccgccgcggtgaaggaggcgcgtgccgcgcgtgccgcg
aagaagaagggcggcgtggcggcgaagacggccgcgaagaagacgcacgcccgcaagaag
tattga
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