Brachypodium distachyon (stiff brome): 100822542
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Entry
100822542 CDS
T01717
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03022
Basal transcription factors
bdi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100822542
09124 Replication and repair
03420 Nucleotide excision repair
100822542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdi03021
]
100822542
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100822542
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
100822542
Transcription machinery [BR:
bdi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100822542
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100822542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
100822542
NCBI-ProteinID:
XP_003569596
UniProt:
I1HQK0
LinkDB
All DBs
Position
2:47213306..47221415
Genome browser
AA seq
766 aa
AA seq
DB search
MAGGDGDRSRAPKRQKSSAPSKAALVDETAEMNYADDFDDDARDGDIEVKKRDFTKLELK
PDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS
VGLETTTIISVLSKLSKTKLPREIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLKTL
LNDEVIARARQSPEDSLGGPSFTVSKTAGEIASGHEDLLDGMELAAATEDKETHSFEIDP
SQVENVKQRCLPNALNFPMLEEYDFRNDTVNPDLDMELKPQARPRPYQEKSLSKMFGNGR
ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDEHISRF
TSDNKEKFRGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMF
RKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW
CPMTKEFFAEYLKKENSKKKQVLYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT
AYAMKLRKPMIYGATSHAERTRILYQFKNSPEVNTVFLSKVGDNSIDIPEANVIIQISSH
AGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQ
GYSFKVITSLPPPDEGPNLSFHTLDEQLDLLGKVLNAGDDMIGVEHLEEDSDGKALLKAR
RSAGLMSAFSGAGGMVYMEYNTGKGKGAKKNKDPAKRHHLFKKRYT
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggcgatggcgatcgctcccgcgcgccgaagcggcagaagtcctcggcgcca
tcaaaggcggctctggttgacgagaccgccgagatgaactacgccgatgatttcgatgac
gacgcccgcgatggggatatcgaggtgaagaagagggacttcaccaagctggagctgaaa
ccggatcacgtgaaccggccgctgtgggcctgcgccgacggccgcatcttcctcgagacc
ttctcgcctctttacaagcaggcttatgatttcctcatcgcgatcgcggaacctgtttgc
aggccagaatctatgcatgaatacaatctaacgccacactcattatatgccgcggtctca
gttggactcgagacaacaactatcattagtgtcttgagtaagctctcgaagaccaaattg
ccccgtgaaataattgatttcatccatgggtcaactgcgaattatggcaaagtaaagctt
gttctgaagaagaaccgatattttgtggaatccccattccctgaggttttgaagactctt
ctgaatgatgaagtcatcgcaagagcacggcaatctcctgaggattccctaggaggacct
tcatttactgttagcaaaacagcaggggaaatagctagtggccatgaggatttgttagat
ggaatggaattggctgctgcaactgaagataaggaaacacattcttttgaaatcgatcca
tctcaggttgagaatgtcaagcaacggtgcttaccaaatgcactaaactttcccatgctg
gaggagtatgattttaggaatgacactgtgaacccagatttggatatggaattaaaacct
caagcacggccaaggccgtatcaagaaaagagcctcagtaagatgtttgggaacggcaga
gcaaggtcaggcattatcgtgctaccttgtggtgctggaaagtcgttggttggtgtatct
gcagcatgccgtataaagaagagctgtctatgcttggccactaatgctgtctctgttgat
caatgggcattccagttcaagctctggtcaactataagagatgaacatatcagccgtttt
acatcagataacaaggagaaatttcgagggatggctggtgttgttgtaactacttataac
atggtggcatttgggggcaaacggtctgaagactcagagaagattattgaagaaatccgg
aacagagagtggggtttgctcctaatggacgaggttcatgttgtccctgcacatatgttc
agaaaggttattagcattactaagtctcactgcaagcttggtcttactgctacgcttgtg
agagaggacgaacgtattactgatctgaattttctaattggaccaaagctgtatgaagca
aactggctggatttagtgaaaggtggatttattgcaaatgtgcagtgtgcagaagtctgg
tgtcccatgaccaaagagttttttgctgagtatttgaaaaaggaaaactcaaagaagaag
caggtactctatgtgatgaatccaaacaagttcagggcttgtgagtttctaattcgattc
catgagcaacaacgtggagataagataattgtgtttgccgacaatttgtttgcactaact
gcatatgcgatgaagctccgtaaaccaatgatttatggtgccacgagccatgctgagagg
acgagaattttgtatcaattcaagaacagcccagaagttaatactgttttcctctctaag
gtgggtgataactcaattgatattccagaagcaaatgtcatcatacaaatatcatctcat
gctggttcccggcgtcaagaagctcaacggttgggacgtatcctcagggcaaagggtaag
catcaagataggatggcaggtggaaaagaagaatacaatgcttttttctactccctggtt
tcaactgacacacaggagatgtactactcaacgaaaaggcaacagttccttatcgaccag
ggctatagcttcaaggtgatcactagcttgccgccacctgacgaaggacctaacctgagc
tttcacacgctcgatgaacaacttgaccttttgggcaaagtgttgaatgcaggggatgac
atgattggtgttgagcacttggaagaggattctgatggcaaggctctcctgaaagctcgg
cgctctgctgggttaatgagcgccttttctggagcgggtggaatggtctacatggagtac
aacactgggaaggggaagggagcgaagaagaacaaggacccagcaaagaggcatcatctg
tttaagaaacgctacacttag
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