Brachypodium distachyon (stiff brome): 100825943
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Entry
100825943 CDS
T01717
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100825943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100825943
Enzymes [BR:
bdi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
100825943
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
100825943
DNA repair and recombination proteins [BR:
bdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
100825943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Fpg-like_C
NFACT_N
Motif
Other DBs
NCBI-GeneID:
100825943
NCBI-ProteinID:
XP_003573683
UniProt:
I1I2Q5
LinkDB
All DBs
Position
3:19253201..19259258
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AA seq
448 aa
AA seq
DB search
MPELPEVEAARLALEEHCVGKRIVRCSAADDTKVIDGIAPSQLEAALVGRTIAAARRKGK
NLWLVLDSPPFPSFQFGMAGAIYIKGVELSKYKRSAVSPTEEWPSKYSKLFVELDDGLEF
SFTDKRRFAKIRLLDNPEAIPPISELGPDALFDPMQLDDFVQSLGRKNVPIKSLLLDQSI
MSGIGNWIADEVLYLARIHPMQTASKISKEKYKALHRCIKEVIEKSVEVGADSSEFPQDW
IFHSREKKPGKAFVDGKKIDFITVGGRTSAYVPELQMLDGADAVAENRCKRRKEKLEKKD
DTTLKKGPRAPKENKKTAKAMTVDDEEEDNPVKQRAKAAKPTKRGRKPMQVAKASSNKAV
SSSTHDNEADEEDQDDEEASKPAKRGRKQPATGSSNKDDCSPDTGNDGKVEAKPGKRRGQ
KQPAAEVKSLPDNEETAVPAKRPQRKKR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctgccggaggtggaggcggcgcgactggcgctggaggagcactgcgttggg
aagaggatcgtgcggtgttccgccgcggatgacaccaaggtcatcgacggcatcgctccg
tcgcagctggaggcggcgctggtcgggaggaccatcgccgccgcacggcgcaagggcaag
aacctatggctcgtgctggactcgccgcctttcccttccttccagttcggaatggcagga
gctatttacatcaagggtgtggagctgagtaaatataaaaggtctgcagtgagcccaact
gaggaatggccttcaaagtactccaaactgtttgttgaattagatgatggcttggagttt
tccttcacagataagaggcgttttgcaaaaatacgattgcttgacaatccagaagccatc
cctccaatttcggagctaggaccagatgccttatttgatccaatgcagcttgatgatttt
gtgcaatctttaggtagaaagaatgtgccaataaaatcccttttgcttgatcagagcatt
atgtcaggaattggcaactggattgcagatgaggtgctttatctggcgaggatccatcct
atgcaaactgcatcgaagatatcgaaggagaaatacaaggcactccatcggtgtattaaa
gaggtgattgaaaagtctgttgaagttggtgctgatagcagtgaatttccacaagactgg
atatttcattctagggagaagaaacccggcaaggcctttgtggatgggaagaaaattgac
ttcattacagtaggtggtaggacttcggcgtatgttccggagctgcagatgttggatggg
gctgatgcagtcgcagaaaacagatgtaagagaaggaaagagaaactagagaaaaaagat
gatacaactttgaagaaaggcccaagggctccaaaagaaaataaaaagactgcgaaggca
atgactgttgatgacgaggaggaagataatccagtaaagcaaagggcaaaagcagcaaaa
cccaccaagaggggaaggaagccaatgcaagtagcaaaagcatcatctaataaggctgta
agtagtagtactcacgacaatgaagccgacgaggaggatcaagatgacgaggaagcttcg
aaaccagcaaagaggggaaggaagcaaccagcgacgggctcatcaaacaaagatgattgt
tctccagatactggtaacgatggcaaggtagaggcaaagccagggaagaggaggggtcag
aagcagccagcagcggaggtaaagagcttgccagacaatgaagagactgccgtcccagca
aagaggccacaaaggaagaagcggtaa
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