Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_0969
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Entry
BBDE_0969 CDS
T04222
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bdn
Bifidobacterium dentium JCM 1195 = DSM 20436
Pathway
bdn03420
Nucleotide excision repair
bdn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBDE_0969
03430 Mismatch repair
BBDE_0969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdn03400
]
BBDE_0969
Enzymes [BR:
bdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBDE_0969
DNA repair and recombination proteins [BR:
bdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBDE_0969
MMR (mismatch excision repair)
Other MMR factors
BBDE_0969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
CarD_TRCF_RID
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAQ26963
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All DBs
Position
1142407..1145040
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AA seq
877 aa
AA seq
DB search
MQQNMGPVLCDPQTLIKDLNPQQSEAVKYYGQALLIGAGAGSGKTRVLTRRIAWLLAHGI
WASQILAITFTNKAAAEMRERLAAIVGPEAERMWISTFHSACVRILRRDGDQIGLKSGFS
IYDTADSERLIKLIGADLNIDLKRYTPRMILGKISDYKNSLISWKDQLKTYAADYRPGQR
GYQLGRFDNVEELFAVVYSEYQYRLAQANAVDFDDLIMRTVELLRTCPQASDYYRHKFRY
IFVDEYQDTNHAQYVLVRELSGIDSGEQADPHATGAGRVGPSWVTVVGDSDQSIYAFRGA
DIRNIQDFEEDFPNAKTIMLEQNYRSTQTILDAANAVIAKNENRKPKKLWTALGKGDPII
GYAADNAQQEAGYIASEITRLHTEEGIAYSDMAIMYRANAQSRSLEEAMINANLPYQLVG
GTKFYERREVKDAIAYLQAIVNPADDVNMRRILNVPKRGLGARAEGLVAMYADRHGTTFF
DGIEHLDQIEGMTGRTAKPLGAFRDLMHELVDFAKAHDAKPSEVVAEVLSRSGLLEELQR
SEDPQDASRVDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGENEDSGKVTM
MTLHTAKGLEYPVVFLTGMEQGTFPHSRAMEDTSELSEERRLAYVGITRAKRRLYVTRAA
VRAQWGQANEMMPSQFLDEIPEDLIDWKRKEAGMERMRGGWQSGFDDDDEFGGWGDDDFG
TSSFGGSGYGSRGGSYGGTTSYGSRSSYGGSSYGSSSSRGGSSYGSGRAAYGSSSRSSYG
SSSYGSGKSAKAGKVTTRHTKPKALDKPRTTPASALSKDNNLNIEDFHIGDKITHDQYGL
GTIVDTQDKGRNSVITVDFGTDGIKRLMLRVAPIEKL
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
gtgcagcagaacatgggacccgtcttgtgcgatccgcaaacgttgatcaaggatctcaat
ccgcagcagagcgaagcggtgaagtactacggtcaggcattgcttatcggcgcaggtgcg
ggatcaggcaagacccgtgtgctgacacgccgtatcgcatggcttctggctcatggcatc
tgggcaagccagattctcgccatcactttcaccaacaaagccgcggccgagatgagggaa
cgtctcgccgcaatcgtcggaccggaagccgaacgcatgtggatttcgacgttccattcc
gcctgcgtgcgcatcctgcgacgcgacggcgaccagatcggcctgaaatccggattctcc
atctatgacaccgctgacagtgaacgactgatcaagctgatcggcgccgatctgaacatt
gacctgaagcgctatacgccgcgcatgattctcggcaagatctccgactacaagaactca
ctgatctcgtggaaggaccagctcaagacctatgccgccgattaccggccggggcaacgc
ggctaccagctgggacggttcgacaacgtcgaggaactgttcgccgtggtgtactccgaa
taccagtaccgtctggcccaggccaacgccgtggacttcgacgatctgattatgcgcacc
gtcgaactgctcagaacgtgcccgcaagcgagcgattattaccggcacaaattccgttac
attttcgtggacgagtatcaggacaccaatcacgcccaatacgtattggtgcgtgaactt
tccggcatcgattcgggcgagcaggccgatccgcatgccacgggcgcgggccgggtcgga
ccctcctgggttaccgtcgtcggtgactccgatcagtccatatacgccttccgcggcgcc
gacatccgcaacatccaggatttcgaagaggacttcccgaacgcgaagaccatcatgctc
gaacagaactaccgttcgacgcagaccattctggatgcggcgaatgcggtgatcgcgaag
aacgagaaccgcaagccgaagaaactgtggaccgcactcggcaaaggcgatccgatcatc
ggctatgcagccgacaacgcgcagcaggaggccggctatatcgcatccgaaatcacaagg
ctgcatacggaggaaggcatcgcctacagcgacatggccatcatgtaccgggccaacgcg
caatcgcgttcactggaagaggcgatgatcaacgccaacctgccataccagttggtagga
ggcaccaaattctacgaacgcagagaagtcaaggacgccatcgcatatttgcaggccatc
gtgaaccccgccgacgacgtgaacatgcgtcgcatcctgaacgtgccgaaacgagggctg
ggcgcccgtgcggaagggctggtcgccatgtatgcggatcggcatggcacgacgttcttc
gacggcatcgaacatcttgaccagatcgaaggcatgaccggacgaacggcgaagccattg
ggagcgttccgcgacctgatgcacgaattggtcgactttgcgaaggcgcatgacgccaaa
ccatccgaagtggtggcggaggtgctgtccagaagcggacttctggaggaactgcaacgc
tccgaagatccgcaggacgcctcacgcgtggataatctttcgcagctgcaatccgtagcg
gcggaattcgaacagaacacgccggacgccacattggcgggattcctggaaaccaccgca
ttggtggcggattccgatcagttgcccggtgagaacgaggattccggcaaggtcacgatg
atgaccctgcataccgccaagggccttgaatatccggtcgtgttcctcaccggcatggag
cagggtaccttccctcattcacgagccatggaagatacgagtgagctttccgaggaacgt
cgtcttgcctatgtgggcatcacccgtgcgaaaaggcgtctgtatgtgacccgagcggcg
gtgcgtgcgcaatggggacaggccaacgaaatgatgccaagccagttcctcgatgagatt
ccggaggatctcatcgattggaagcgtaaggaagccggcatggaacgcatgcgcggcggt
tggcagagcggcttcgacgatgacgacgaattcggcggttggggcgatgacgacttcggc
acctcgtcgttcggcggctccggatatggctcacgtggcggatcctatggtggaacgacc
tcatacggttctcgctcttcgtatggaggatcgtcatatggctcgtcatcctcccgtggt
ggctcgtcctacggttcgggccgtgccgcgtacggttcgagttcgcgatcctcgtacgga
tcgtcttcctacggttccggcaagtccgctaaggccggcaaggtgaccacccgtcacacc
aaaccgaaggcgcttgacaaaccgagaaccacacccgcctccgcactgagcaaggacaat
aacctcaatatcgaggatttccatatcggagacaagatcacgcacgaccagtatggcttg
ggcaccatcgtcgatacgcaggacaagggccgcaattccgttatcaccgtggatttcggc
acggatggcatcaagcggctgatgctgcgcgtggcgcctatcgaaaagctctga
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