Brevundimonas fontaquae: JX001_05660
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Entry
JX001_05660 CDS
T09174
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bfq
Brevundimonas fontaquae
Pathway
bfq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JX001_05660 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfq03400
]
JX001_05660 (ligD)
Enzymes [BR:
bfq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JX001_05660 (ligD)
DNA repair and recombination proteins [BR:
bfq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JX001_05660 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QSF55288
LinkDB
All DBs
Position
1172291..1174852
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AA seq
853 aa
AA seq
DB search
MRGELKTYQAKRRFGETPEPKGAKAKRAKGGFRYLIQRHAATRLHYDFRIEADGVLKSWA
VTKAPSRDTAVKRLAVEVEDHPLDYGSFEGTIPDGNYGAGTVQMWDVGTWEPQEPDLEAA
WAKGQIKMILHGERLKGKWALIRLKSDRGKPSKRNNWLLLKEKDDFAVAGEGDALAEIDA
SVTTGRSLAEIADGTKQWTASKPTGRKGPVKPKPPKAAAKARKPPAFVPIQLCKVTDHPP
GGTGWAHEIKFDGYRIQIGVGGGRAVLRTRKGLDWSDKFPDLAADAATWPDAVIDGELCA
LDDDHMPDFGALQAAISDEKTEGLVYFAFDLLFEGAEDLRKLPLSHRKARLQAYVDRIGK
AAAGRLRYVEHFASTGQAVLESACRMDLEGVISKKLDAPYHAGRSSTWLKSKCRGRDEVV
IGGWSSEGGTRFRSLLVGVREKGGLRYLGRVGTGYGEAVTKTLVPALKGVAAEKSPFAGA
GAPKAANDIHWVKPVLVAEVEHGGYTESGSLRQAAFKGLREDKTAAEVTEPPQPPTDMGD
AKKTMTTVRPAGKPGKVVVAGVTLSSPDKVLWPAVGDRPAITKADLARYYEAAAERILPH
VTDRPTSIIRAPEGIGGETFFQRHAMAGSNPRLKLIDVKARTPYVAAVDGGGLVAIAQSG
GLELHPWGCAPGQPEVPEQITFDLDPDEGLDFADVIAASKVVKAKIEALGLAAFVKTTGG
KGLHVVVPIKTDARSRVTWDQNKAFAKAVAESIRAEAPDRFTTTLAKKARGGKIFIDYLR
NGRMATAVAPWSPRARPGAGIALPLSWGQVKVGLDPSAFNLWTYAALLKKPDPWADFRAS
AVSLKSALKKMGV
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggtgaactgaagacctatcaggccaagcgccggttcggcgaaacgcccgagccg
aagggcgccaaggcaaagcgcgcgaagggcggcttccgctacctgattcagcgccatgcc
gcgacgcgactgcactatgacttccgcatcgaggcggacggggtgctgaaatcctgggcc
gtgaccaaggcgccgtcgcgcgacacagcggtgaagcggctggcggtcgaggtcgaggat
catccgctggattacgggtcgttcgaggggacgattcccgacggcaactacggcgccggc
acggtgcagatgtgggatgtcggcacctgggagccgcaggagccggacctggaggcggcc
tgggccaagggtcagatcaagatgatccttcacggcgaacggctgaagggcaaatgggcg
ctgattcggctgaagagcgatcggggcaaaccctccaaacgcaacaactggctgctgctt
aaggagaaggacgacttcgccgtggcgggggagggcgatgcgctggccgaaatcgacgcc
tcggtgacgaccgggcggtcgctggccgagattgcggacgggaccaagcaatggacggcg
tccaagccgactgggcgtaaaggcccggtcaagcccaagcccccgaaagcggcggcgaag
gccaggaagccgccggccttcgtgccgatccagctgtgcaaggtgactgaccatccgccg
ggcgggacgggctgggcgcacgagatcaagttcgacggctatcgcatccagatcggcgtg
ggcggcggtcgggcggtcttgcggacacgcaagggtctggactggagcgacaagttcccg
gaccttgcggcggatgcggcgacctggcccgacgcggtgatcgacggcgaactgtgcgcg
ctcgacgacgatcacatgccggacttcggggcgttgcaggccgccatttcggacgagaag
acggaaggcctggtctatttcgccttcgacctgttgttcgagggggcggaggatctgcgc
aaactgccgctgtcgcatcgcaaggcgcggctgcaggcctatgtggacaggatcggaaag
gcggccgcagggcggctgcgctacgtcgagcatttcgcctcgaccggccaggcggtgctg
gagagcgcctgccggatggatctggaaggcgtgatctccaagaagctggacgcgccctat
cacgccgggcggtcatcaacctggctgaagtccaaatgccgggggcgcgacgaagtggtg
atcggcggctggtcgtccgagggcggcacgcggttccgctctctgctggtcggggtcagg
gaaaagggcggcctgcgctatctgggccgggtcgggaccggctatggcgaggcggtgacg
aaaacgcttgttccggcgctgaagggcgtggcggcggagaagtctcccttcgccggggcg
ggcgcgcccaaggcggccaacgacatccattgggtcaagccggtgctggtcgccgaggtc
gagcacggcggctataccgaatccggatcgctgcggcaggcggcgttcaaagggttgcga
gaagacaagacggccgcagaggtcaccgagccgccgcagccgcccacggacatgggcgac
gcgaagaagaccatgacgacggtgcgaccggctggaaagccgggcaaggtggtcgtggcg
ggcgtgaccctctccagccccgataaggtgttgtggcccgccgtcggcgaccggccggcg
atcaccaaggccgatctggcccgatattatgaagcggcggccgagcggattctgccccat
gtgacggaccggccgacctcgatcatccgagcgcccgaggggatcggcggcgagaccttc
ttccagcgtcatgccatggcggggtcgaacccgcggctgaagctgatcgacgtcaaagcc
cgcaccccttacgtcgccgccgtcgatggcggcggcctggtcgccatcgcccagtcgggc
gggctggaactccacccctggggctgtgcgcctggccagccggaagtgcctgagcagatc
accttcgatctggatccggacgaggggctggacttcgccgacgtcatcgccgcgtccaag
gtcgtgaaggcgaagatcgaggcgctgggtctggccgccttcgtcaagacgaccgggggc
aaggggctgcacgtcgtcgtgccgatcaagaccgacgcccgctcgcgggtgacctgggat
cagaacaaggccttcgccaaggccgtggccgagtccatccgcgccgaggcgccggaccgg
ttcaccacgaccctggccaagaaggcgcggggtgggaaaatcttcatcgactatctgcgc
aacgggcgaatggcgacggcggtcgcgccctggtcgccgcgcgcacggccgggggcgggg
atcgccttgccgctgtcgtgggggcaggtgaaggttgggctagatccctccgcattcaac
ctttggacctatgcggccttgctgaagaagcccgatccatgggccgatttccgcgcctcg
gcggtcagtttgaaatcggcgctgaaaaaaatgggcgtctag
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