Bacteroides fragilis YCH46: BF1660
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Entry
BF1660 CDS
T00202
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bfr
Bacteroides fragilis YCH46
Pathway
bfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF1660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfr03019
]
BF1660
Enzymes [BR:
bfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BF1660
Messenger RNA biogenesis [BR:
bfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BF1660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Phage_integrase
AAA_19
ERCC3_RAD25_C
CheB_methylest
Motif
Other DBs
NCBI-ProteinID:
BAD48408
UniProt:
Q64VR8
LinkDB
All DBs
Position
complement(1923815..1925098)
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AA seq
427 aa
AA seq
DB search
MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL
QKLYKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRS
GIQILVATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQTL
FFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLKDTS
IESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIATDI
AARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDIQKLI
GKNIPVVKDHPFVTTEGIKAQEEKQEEIKVKAKANKTYRGSRANGDFWRRKKQKTNQPSS
TKQEKRK
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaaaatttgaatttgatagagcctatcttaaaggctttaagacaagagggt
tacacctctcccaccccaatacaagaacagtcaatccccattttacttcaaggaaaagat
ttattaggttgtgctcaaacaggtaccggtaaaacagctgctttttctatccctatcttg
caaaaattgtataaaaccgaccatcgtaaaggtatcaaggcacttgtgctgacgccaacc
cgggaacttgcaattcagataggtgaaagtttcgaagcatacggacggtataccggtctg
aaacatgccgtaatctttggaggagtaggacagaaaccacagactgacgctctacggagc
ggtattcagatactggttgccactcccggcagattattggatttgatatcacagggattt
atctccctgagttcacttgatttttttgtattagacgaagcagaccgtatgctggacatg
ggatttatccatgacatcaaacgcatcctgaaactgctaccggcccgaagacaaactttg
tttttttcggcgaccatgccaccggaaatagaaacgttggcaaattcgatgttgactaaa
ccggagaaagtggaagtgaccccggcctcttcgactgtggacatcatctcacagcaggtc
tatttcgtcgagaaaaaagaaaaaaaggacttgctgatccatctgttgaaagatacatca
atcgagtcggtacttatctttacgcgtacaaaatacggagccgacaaattggcacgtgta
ctgactaaagccggtatcggagctgaagcgatacatggtaacaaaactcaaaatgcacgc
cagcgtgctttgaccaattttaagaaccatacccttcgcgccttgatagcaaccgacatt
gctgcacgcggcatcgatgtagaccaattatcacacgtaatcaattacgagttgcccaat
gttccggaaacttacgtgcaccgcatcggtcgtaccggacgtgccggacatgaaggagtg
gccatctctttctgcgaatcagaagaactgccctacttaaaagatatccaaaagttgata
gggaaaaacatcccggtggtaaaagaccacccgtttgtcacgaccgaaggtatcaaggcc
caggaagaaaagcaggaagaaatcaaggttaaagccaaagccaacaaaacataccgcggg
agccgggctaatggcgacttctggagacggaaaaagcaaaaaaccaatcaaccgtcttcc
accaaacaggaaaaaaggaaatag
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