Blastomonas fulva: B5J99_05290
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Entry
B5J99_05290 CDS
T05612
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bfw
Blastomonas fulva
Pathway
bfw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bfw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B5J99_05290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfw03400
]
B5J99_05290
Enzymes [BR:
bfw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B5J99_05290
DNA repair and recombination proteins [BR:
bfw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B5J99_05290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ASR50959
UniProt:
A0A222WWK2
LinkDB
All DBs
Position
complement(1124987..1127464)
Genome browser
AA seq
825 aa
AA seq
DB search
MARAADLLADYNAKRDFKQTPEPAGKVSKAAGNRFIVQKHDATRLHFDLRLEIDGVLKSW
AVTKGPSANPEDKRLAVRTEDHPMSYADFEGVIPKGAYGGGTVMLWDSGSWAPIAGKSAH
DIEEGHLHFTLDGQRMKGEWLLVRMKPRPGEKRENWLLRKIADRWAGGTDDLVGRALTSV
LSDRTMAQIAAGEEGLKPDLGAKPASTAKPASKRRSKGTPPKFRALQLATLVDAVPAGHD
WIHEIKYDGYRAAVAAAGSDVRIYTRNGLDWTDKFAPLVAHIAALDLPPCLIDGEIVAFD
ANGNPDFSALQAVLKRGKGAQDAKTELQFFAFDLIEQDGKSLTTLGNLERKERLEALLHD
AAPPIAVADHVIGAGERLYAAMCSAGQEGIISKRAESGYAGKRSTNWVKVKCTRRQEFVI
VGWNPSRAKGRPFASLLLAQHEGDALVYKGNVGTGFSADGMDDLARTFAKLARKTAPLPV
EGAAARHAHWLKPELVAEIAFAEFTAGGAVRHASFLGLRGDKAARDVTPEVARPAPADHD
VVTITSRDRVIFPEAKKTKGDLADYYAAVAPVMVMHAARRPISLVRCPQGRAKACFFQKH
DSGSFGEHVHHISIREKDGGHEDYLYVEDAAGLLACVQMGTIEFHGWGSQIAAVEHPDRM
VFDLDPDEGLDFADVRKAALDIRGHLADMGLVSFAMLTGGKGVHVVVPLDPGHSWDAHKA
FARHFAEALSMAEPDRFVATMSKAKRKGRIFIDWLRNQRGSTAVMPYSARARPHAPVAVP
IGWEALAEAKSASRYTIDDSSLLLERAARSDLQGWGFAAQALPQY
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggcaagggccgccgatctgcttgccgactataacgccaagcgcgatttcaagcagacg
cctgagcccgccggaaaggtgtcgaaggctgcaggcaaccgcttcatcgtgcagaagcac
gatgccacgcggctgcacttcgatctgcggctcgagatcgacggcgtgctcaagagctgg
gcggtcaccaaggggcccagcgccaatcccgaagacaaaaggctggcggtgcgcaccgag
gaccatccgatgtcgtacgccgatttcgagggcgttatccccaagggtgcctatggcggc
ggcacggtgatgctgtgggacagcggcagctgggcaccgatcgccggaaaaagcgcgcac
gacatcgaggaggggcatctccacttcacgctcgacggccagcggatgaagggcgaatgg
ctgctggtgcggatgaagccgcgccccggcgaaaagcgcgagaactggctgctgcgcaag
atcgccgacagatgggccggtggcacggatgatctggttggccgcgcgctcaccagcgtt
ctcagcgaccggacgatggcacagatcgctgcgggggaagaaggcctgaaaccagacttg
ggcgcaaagcctgccagcacggccaaacccgcatccaaacgccggtccaagggcacgccg
cccaagttccgtgccctgcagctggcgacattggtcgatgccgtccctgccgggcacgac
tggatccacgagatcaagtatgacggctatcgcgccgccgtcgccgcagcgggcagcgac
gtgcgcatctacacgcgcaacggactggactggaccgacaagtttgcgccgctggtcgcc
cacatcgccgcgctcgatcttccgccctgcctgatcgatggcgagatcgtcgcgttcgac
gccaacggcaaccccgatttctctgcgctgcaggccgttctcaaacgcggcaagggcgcg
caggacgcaaagaccgaattgcagttcttcgccttcgacctgatcgagcaggacggcaag
tcgctgaccacgctgggcaatctcgagcgcaaggaacggctcgaagcgctgctgcatgat
gccgccccgccgatcgcggtggccgatcatgtcatcggtgccggggagaggctgtacgcc
gcgatgtgcagcgcggggcaggaggggatcatctccaagcgcgccgaatcgggctatgcc
ggcaaaaggtcgaccaactgggtcaaggtgaagtgcacccgccgccaagagttcgtcatc
gtcggctggaacccctccagggcgaaggggcggccgttcgcctcgctgctgctcgcccag
cacgagggcgatgcattggtctacaagggcaatgtcggcacggggttcagcgccgatggc
atggacgatcttgcgcggactttcgcgaaactcgcccgcaagaccgcgccgttgcccgtc
gagggtgccgccgcccgccatgcgcactggctgaagcccgagcttgtcgccgagatcgca
tttgcggaattcaccgcgggcggagcggtccggcatgcgagctttctgggcctgcgcggc
gacaaggcagcgcgcgatgtgaccccggaggtcgcacggcccgcgccagccgaccatgat
gtggtcacgatcaccagccgcgatcgcgtcatcttccccgaagcgaagaagaccaagggc
gaccttgcggattattatgccgcggtcgctccggtcatggtgatgcatgctgcgcgccgc
ccgatcagcctggtgcgctgtccgcaggggcgcgccaaggcgtgcttcttccagaagcat
gattcgggctcgttcggcgagcatgtccaccatatcagcattcgcgagaaggacggcggg
cacgaagactatctgtatgtcgaggatgccgccgggctgctggcctgtgtgcagatgggg
acgatcgagttccacggctggggcagccagattgcggcggtcgagcatcccgaccggatg
gtgttcgatctcgatcccgacgagggtctcgattttgccgatgtcagaaaggccgcgctc
gatattcgcgggcatcttgccgacatgggcctggtcagctttgcgatgctcaccggcggc
aagggcgtgcatgtcgtggtgccgctcgatcccgggcacagctgggatgcgcacaaggcc
tttgcgcgccactttgccgaagcgctgagcatggccgagcccgaccgctttgttgcaacc
atgagcaaggccaagcgcaagggcaggatcttcatcgactggctgcgcaaccagcggggc
agcacagccgtgatgccctattcggcccgcgcccgcccgcatgcgccggtggcggtgccg
atcggctgggaagcgctggcagaagcgaagagcgcaagccggtacacgatcgacgacagc
agcctgctgctcgagcgggcggcaaggtccgaccttcagggctggggatttgcagcgcag
gccctgccccaatactga
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