Bordetella holmesii ATCC 51541: D560_3370
Help
Entry
D560_3370 CDS
T03052
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bho
Bordetella holmesii ATCC 51541
Pathway
bho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D560_3370 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bho03019
]
D560_3370 (pnp)
03016 Transfer RNA biogenesis [BR:
bho03016
]
D560_3370 (pnp)
Enzymes [BR:
bho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
D560_3370 (pnp)
Messenger RNA biogenesis [BR:
bho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D560_3370 (pnp)
Transfer RNA biogenesis [BR:
bho03016
]
Prokaryotic type
tRNA degradation factors
D560_3370 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
KhpA-B_KH
SLS1_KH2
TMP-TENI
Motif
Other DBs
NCBI-ProteinID:
AHV92879
LinkDB
All DBs
Position
complement(3128736..3130346)
Genome browser
AA seq
536 aa
AA seq
DB search
MLMVESEAQQLSEEIMLGGVVFGHEQMQAAVNAIHDLVRDAGKPEWNWAPAAKNDALIAA
VTAAAQEGLTAAYQIREKQARTTKLRDVYADVSAKLAEQAAAAGQDAPDSVTVDNILFDL
EARLVRSQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQ
DEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLVPVLPKPED
FQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPTTDHVAGVAMGLILEDGKFAVLTD
ILGDEDHLGDMDFKVAGTENGITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMRDS
LDGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTIVIASV
DETQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIANYRIA
NINDVLKVGQQVRVKVIEADDKGRLRLSVKAIGGIEQQQPPAADAPAAAPAEPQAE
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
gtgctgatggtcgagtccgaagcccaacaactgtccgaagagatcatgctcggcggtgtg
gtgttcggccacgaacagatgcaggccgctgtcaacgccatccatgatctggtgcgcgat
gccggcaagcccgagtggaactgggcgcctgcggccaagaacgacgctctgattgccgcg
gtgaccgccgcggctcaagagggtctgaccgctgcctatcagatccgcgagaagcaggcg
cgcacgaccaagttgcgtgacgtctacgccgatgtgtcggccaagctggccgagcaggcc
gctgccgcaggccaggatgcgcccgatagcgtgaccgtcgacaacatcctgttcgatctg
gaggcgcgtctggtgcgtagccagatcctcaatggcgagccccgtatcgatggtcgcgac
acccgcacggtgcgtccgatcagcgtgcgcctgggcgtgttgccgcgcgctcacggcagt
gccctgttcacccgtggtgaaacgcaggccctggtcgtggctacgctgggcaccaagcag
gatgagcagatcatcgatgcgctgatgggcgagtaccgtgaccgcttcatgctgcactac
aacatgccgcctttcgccaccggcgaaaccggccgtattggtgtgcccaagcgtcgtgaa
atcggccatggccgactggccaagcgttcgctggtgccggtgctgcccaagcccgaggac
ttccagtacacgatccgtatcgtctccgaaatcaccgagtccaatggctcctcgtcgatg
gcttcggtctgcggcggctcgctggccatgatggacgccggcgtgccgaccacggatcac
gtcgctggcgtggccatgggcttgattctcgaagacggcaagtttgccgtgctgaccgat
attctgggtgatgaagatcacctgggcgacatggacttcaaggttgcgggtaccgaaaac
ggcatcaccgcgctgcagatggacatcaagatccagggcatcaccaaggaaatcatgcaa
gtcgcgctggctcaggcccgcgaaggccgtctgcacatcctgggcaagatgcgtgattcg
ctggatggttcgcgcaccgagctgtccgcattcgcgccgcgcatgctgaccatcaagatc
aaccccgagaagatccgtgacgtgatcggcaagggcggcgccacgatccgtgcgctgacc
gaagaaaccggtacgcagatcgacatctccgatgacggcaccatcgtgatcgccagcgtg
gacgagactcaggccaaggaagcgcaacgccgcatcgtcgaactgaccgctgatgtcgaa
gtgggtcaggtctacgacggttccgtgctgcgcctgctggactttggcgccatcgtgcaa
gtgctgccgggccgcgacggtctgctgcacatctcggaaatcgccaactaccgcatcgcc
aacatcaacgacgtgttgaaggtcggtcagcaagtccgcgtcaaggtcatcgaggccgac
gacaagggccgcctgcgcctttcggtcaaggctatcggtggtatcgaacagcagcagccg
cctgctgccgatgccccggccgcagcccctgccgagccgcaagccgagtaa
DBGET
integrated database retrieval system
