Beijerinckia indica: Bind_1778
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Entry
Bind_1778 CDS
T00688
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bid
Beijerinckia indica
Pathway
bid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bind_1778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bid03019
]
Bind_1778
Enzymes [BR:
bid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bind_1778
Messenger RNA biogenesis [BR:
bid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bind_1778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25
Motif
Other DBs
NCBI-ProteinID:
ACB95406
UniProt:
B2IDH0
LinkDB
All DBs
Position
2016552..2017991
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AA seq
479 aa
AA seq
DB search
MTDFRGLGLASSLLDTLAKQGFTRPTPIQAQAIPAILEGRDLIGIAQTGTGKTAAFALPI
LHALITHPTPAPRGGARVLVLSPTRELASQIAETFRTLGQSHALSVAVVFGGVSPGAQIK
ALQRGLDILVATPGRLVDHIDSGVAHLGKTEFFVLDEVDQMLDLGFVKPIRRIVGTLPAK
RQSLFFSATMPGEIRKLATDLLKDPVTVSVTPVAKTADRVRQQVVFVETHRKRDILIELF
GDAMMTRTIVFTRTKRGADKVTQHLEKAGIPAFAIHGNKSQSQRERSLLAFRSGHVRALV
ATDIAARGIDIDGVTHVVNYELPEVPESYVHRIGRTARAGAEGIAISLCDGTERDYLRNI
EKLTRLNLPVEDRRSSLQNGEISPAARQHSDRRPAYGETCRQDRSQDRSLDPSRDRPSGR
FSRPGNQERRGDGDTRANEQRPQRQNRPAASLSKGTRPRPAFHQRRQRSDIEQSPADQS
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
ttgactgattttcgcggccttggccttgcctcatcccttctcgacacattggcaaaacaa
ggtttcacccgacctaccccaatccaggcacaagccattccggcaatcctggagggccgc
gatctcatcggcattgctcagacaggaaccggcaagaccgccgctttcgcccttccgatc
ctgcacgcgctcatcacccatccgacacccgccccgcgtggtggcgcgcgcgtcctcgta
ttgagcccgacacgggagcttgcaagtcagatcgccgagaccttccggacactcgggcaa
tcccatgccctttctgtcgccgttgttttcggtggcgtatcgcctggcgctcagatcaag
gctttgcagcgcggcctcgacattcttgtcgcgacacctggacggctcgtagaccacatc
gattccggtgttgcccatctcggcaagacggaattcttcgttctcgatgaagttgatcag
atgctcgatctcggcttcgtcaagccgatacggcgtatcgttggaaccctgccggctaaa
cgccaaagcctgttcttttccgcgaccatgcctggagaaattcgcaagcttgccacggat
ctattgaaagacccggtcacggtttccgtgacgccagtcgccaagaccgccgatcgtgtg
cggcaacaagttgtgttcgtggagacgcatcgcaaacgtgatattctcatcgaattattc
ggcgacgcgatgatgacgcgcaccattgtcttcacgcgcaccaagcgcggcgccgataaa
gtcacccagcatctcgaaaaggctggcattcccgcttttgcgatccacggcaacaagagc
cagagccagcgtgaacgatcactcctcgccttccgctctggccatgtccgggcgctggtt
gcgaccgatatagccgcgcggggcatcgatatcgatggcgtcactcacgtcgtcaattat
gaattgccggaagttcccgaaagctatgttcaccgtattggccgcaccgcccgcgccgga
gcggagggcattgccatttccttatgcgacggaacagagcgggattatttgcgcaatatc
gaaaaactcacccgtctcaatcttcccgtcgaagaccgccgcagcagcttgcaaaatggg
gagatttccccggctgcgcggcagcattcggatcgccgcccagcctatggggaaacctgt
cgccaagatcgctcccaagatcgctcactggacccttcccgagatcgcccatctggacgc
ttctcacggccgggaaatcaggagcgtagaggtgatggcgacacacgcgccaacgaacaa
agacctcagcggcaaaacaggccagcggcatccctctcgaaaggcacgcggcctcggcct
gctttccaccaaaggcgtcagcgctctgatatcgagcaatccccggccgatcagagttaa
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