Bombus impatiens (common eastern bumble bee): 100745965
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Entry
100745965 CDS
T04362
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bim
Bombus impatiens (common eastern bumble bee)
Brite
KEGG Orthology (KO) [BR:
bim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bim03016
]
100745965
Enzymes [BR:
bim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
100745965
Transfer RNA biogenesis [BR:
bim03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
100745965
Prokaryotic type
tRNA splicing ligases
100745965
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
100745965
NCBI-ProteinID:
XP_003486446
UniProt:
A0A6P3DRW9
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYQEELKYLEKITETCWRIKKGFQPNMKVEGVFYVNNTLERLMFDELKNACRPGAV
GGFLPGMKQIANVAALPGIVWKSVGLPDVHSGYGFAIGNMAAFDMNDPKSIVSPGGVGFD
INCGVRLLRTNLFEEDVLPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADSSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDQIYD
KWAACKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SQEGQDYLKAMAAAANFAWVNRSSMTFLSRQAFAKQFRQSPDDLDMHVIYDVSHNIAKIE
EHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTDQAM
KETFGSTCHGAGRALSRAKSRRNLDYTDVLEKLERQGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISRKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtagttaggcagtatcaagaagaattaaaatacttagaaaagataactgaaacatgt
tggaggataaagaagggttttcaacctaatatgaaggttgaaggtgttttttatgtaaat
aacacgttagaacggttaatgtttgatgagttaaaaaatgcatgcagaccaggagcagtg
ggtgggtttctcccaggtatgaaacagattgccaatgttgctgctcttcctggtattgtt
tggaagtcggttggattgcctgatgtacattctggatatggttttgcaattggtaacatg
gcagcatttgatatgaatgacccaaaatctatagtatcacctggtggagtcggatttgac
ataaattgtggagtacgtctattaagaactaacttgttcgaagaagatgttctacctgtg
aaggaacaacttgcccagagcatgtttgatcacattcctgttggtgttggttcaaaagga
atcatacccatgaacgcacgtgatttagaagaagccttagaaatgggaatggattggtct
ctcagagaaggttatatctgggcagaggataaagaacattgtgaagaatatggtagaatg
cttaatgcagattcttctaaggtatcaatgagggctaagaaacgtgggcttccacagcta
ggaacattaggtgcaggaaaccactatgcagagattcaagtagtagatcaaatttacgac
aaatgggcagcatgtaaaatgggtattgaagaaaagggtcaaatttgtgtgatgattcat
tctggtagcagaggatttggacaccaagttgcaactgatgcacttgtacaaatggaaaag
gccatgaaacgagacaatatcgaaactaacgataggcagttagcttgcgctcatataaaa
tctcaagaaggtcaagattatctaaaagctatggctgcagctgccaattttgcatgggtc
aataggagctctatgacattcctcagtcgacaagcatttgccaaacagttccgacaatct
cccgatgatttagacatgcatgttatatatgatgtctcccataatattgcaaaaatagaa
gaacatatggtcgacggaaagcagaaaacccttctagtgcataggaagggatctacaaga
gcatttccacctcaccatcctctgattcctgtagactatcaattaacaggtcaacctgtt
ttaattggtggtactatgggaacttgtagctacgttcttactggaactgatcaagctatg
aaagaaacatttggatccacgtgtcatggagcaggtcgagctttatctagagccaagtca
cgcagaaacttggactacacagatgtattagaaaaattagaacgacaaggaatatcgatt
agagtcgcttcgcctaagttagttatggaagaagcaccggagtcttacaaaaatgtgaca
gatgttgtggatacgtgccatgctgcaggtatttcccggaaatgtataaaattaaggcca
attgcagttatcaaaggataa
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