Bifidobacterium kashiwanohense PV20-2: AH68_07490
Help
Entry
AH68_07490 CDS
T03496
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bka
Bifidobacterium kashiwanohense PV20-2
Brite
KEGG Orthology (KO) [BR:
bka00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bka03019
]
AH68_07490
Enzymes [BR:
bka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AH68_07490
Messenger RNA biogenesis [BR:
bka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AH68_07490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_22
AAA_19
HA2_C
SLFN-g3_helicase
T2SSE
nSTAND3
AAA_30
NACHT
AAA_11
Zeta_toxin
ResIII
AAA_16
TsaE
SRP54
Motif
Other DBs
NCBI-ProteinID:
AIZ14918
UniProt:
A0A0A7I3P8
LinkDB
All DBs
Position
1644550..1648650
Genome browser
AA seq
1366 aa
AA seq
DB search
MKFEYPSQLPVSAARNDIAEAVKSSQVVIVSGQTGSGKTTQLPKILLELGRGSHGRQIVH
TQPRRLAARTVAERIASEMGVRLGDEVGYQVRFTDESSPKTRLRVVTDGILLAQIQRDPK
LMQYDTIVIDEAHERSLNIDFLLGYLTALLPKRRDLKLVITSATIDSVKFQEHFEHALHT
KVPVIEVSGRTYPVQVVYEPLGTAPALMRSVPGFETGAMPGDADYETLSAAPDAKDSREP
NVDMPTAVARACAELVIHSSHDRGPRDILVFASGERDIHDFENALRHHYGPRAIDMRRPD
AIEIVPLFARLSAKEQHRVFEPHDHQRIVIATNVAETSLTVPGIRYVVDPGTARISRYSK
SAKVQRLPIEPISQASANQRSGRCGRIADGIAIRLYSREDFETRPEFTEPEILRTSLGAV
VLHMLSVGVARTAQDVTDFGFIDPPDMKAVSDGFNELTELKAVARKHGEVVLTHTGRMLA
RIPIDVRLGRMIIEAAKSTTPNTLAAVLVVVAFLSLQDPRERPDENREEADRIHNRYADP
SSDFLTALNLWDRVFQADGEPSNSALRRICKTEYLSWLRIRQWKDLVTQLREMCKEFKFK
VGDPIPASRPPLEIRQLPSNQQAAHSLCCSWDAQGIHTSMLSGLLSMMGMQIVREPKASD
FAGLKGAARARAMKRAQKMAKNDYQGARGTHFALFPASAVAKSTPQWVMSTELVETSRLW
ARYSAQIDPAWAEPLAGSLTRTTYADPHWSGSRGSAVASAKVLLYGLPIVQDRTVQWGRI
NPLEARDFLIRQGLVEGDIQQRFSYDDFIAKNRDVLEDAADDASRTRQMAQTVSDEDLFD
FYNSVIPNTVTSVADLAKWWKSKHDEQPDLLDFDPEKVERLADAESVSLADYPDHWHTLG
TDGSPIDLRLSYVYDPHDPNDGVTVHVPLKVLSRLTPEQFTWNVPGLLDELIVGMIKSLP
KTLRVQFVPAPDTARKIRAWIDERYPDLPGSGNQQKPNLAPANAEGVAAWPDLPHTFTQA
AISIVGAQIHPEVLTGELWSKLTPYLRVTFSVEQQLPPSRKSQHGRRHARGPVKVLGSGK
SLVELQRKFAEQAEASARQMVKKQAENAGNQGKLVEQANLLHKAGATTETRSTMLWRGAL
DVLRMPSERISSRWLGAEALMLASAPYQSTKDLTEDLQLAAVKRLLPNVDELPDDEALAN
AVLDVREVFEDTVYAVAHDVIAILKRYAEVDKAVSGKADLPMLSVLQSIREHIATLVYPG
FIGKTPPDALASIERYLHADMLRLGKAKNDKNRDVRWAWEADEAKQLADKAMAKAEREPA
GPRHEALMKQAATARWMLEEFYVSLWAQELGTPKPISLQRIKKALS
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaatatccttcccaactgccggtttccgctgcacgtaacgatattgccgag
gcggtgaagtcgagccaagtcgtgattgtgtctggtcagacgggttccggtaagaccacg
cagctgccgaagattctgttggaattgggccgtggatcgcatggcaggcagattgtgcac
acgcagccgcgtaggttggccgcgcgtaccgtggccgaacgtatcgcctcggagatgggc
gtgcgtttgggtgacgaggtcggctatcaggtgcgtttcaccgatgagagctcaccgaag
acccgtcttcgcgtggtgaccgacggtattctgttggcgcagattcaacgcgatccgaaa
ctgatgcaatacgatacgatcgttatcgacgaggcgcacgaacgtagtctcaatatcgac
tttctgctcggctatttgactgcgctattgccgaaacgccgtgacctgaaattggtaatc
acgtcggcgacgattgattcggtgaagttccaggagcatttcgaacatgctttgcatacg
aaagtgccggttatcgaggtttcggggcgaacctaccccgtgcaggtcgtgtatgaaccg
ctgggtaccgctccggcgttgatgcgttccgtacccggttttgaaacgggcgcgatgccg
ggcgatgccgactatgaaacgttgtcggccgctcccgacgcgaaggattcccgcgagccg
aacgttgacatgccgacggcggtggcgcgcgcctgtgccgagttggtgattcattcgagt
catgaccgtggcccgcgcgatattctcgtgttcgcttcgggcgagcgcgacattcatgat
tttgagaatgcgttgcgtcatcattatggtccgcgtgccattgatatgcgtcgtcctgat
gcgattgagatcgtgccgctgttcgcgcggttgtccgccaaggagcagcatcgcgtgttt
gagccgcacgaccatcagcgtattgtgatcgctacgaatgtggccgaaacgtcgttgacg
gtgccgggcattcgttatgtggtcgaccctggcaccgctcgtatttcacgttattcgaag
agcgcgaaagtgcaacggcttccgattgaaccgattagtcaagcgagtgcgaaccaacgt
tcgggtcgttgcggtcgtattgccgatggtattgcgattcgcttgtattctcgtgaggat
ttcgagacgcgcccggaattcacggagcctgagattctgcgcacgtcgttgggtgcggtc
gtattgcatatgctgtcggtgggtgtggctcgtaccgcgcaggatgttacggatttcggc
tttatcgatccgcctgatatgaaggcggtgtctgacggtttcaatgagttgaccgagttg
aaggccgtggcgcgcaagcatggcgaggttgtgctgacgcatacgggtcgcatgcttgca
cgcattccgatcgacgtgcgtttgggccgtatgatcatcgaggctgcgaagtcgaccacg
ccgaacacgttggccgcagtgctggtggtggtcgcgttcctgagtttgcaggatccccgc
gaacgtccggatgagaatcgtgaggaggccgaccgcattcacaaccggtatgccgatccg
tccagtgattttctgaccgcgttgaacttgtgggatcgcgtgttccaagctgatggcgag
ccgagcaattccgcgcttcgtaggatttgcaagactgagtatttgagttggctgcgcatc
cgtcagtggaaggatctggtcacgcagttgcgtgagatgtgcaaggaattcaagttcaag
gttggcgatccgattccggcttcgcgtccgccgcttgagattcgtcagcttccgtcgaat
cagcaggctgcgcattcgttgtgttgttcgtgggatgcgcagggtattcatacgtcgatg
ctttcgggcttgttgtcgatgatgggcatgcagatcgtgcgtgaaccgaaggcatctgat
ttcgctggcttgaagggcgctgcccgtgcgcgtgccatgaagcgcgcgcagaagatggcg
aagaatgattatcagggtgcgcgtggcacgcatttcgcattgttcccggcttccgcggtt
gccaagtcgacaccgcaatgggtgatgagcacggagttggtggaaacgagccgcttgtgg
gcgcgatattccgcccagatcgatcctgcttgggctgaaccgttggcgggttcgttgacg
cgaaccacgtatgcggatccgcattggtcaggctcgcgtggttccgcggtggcgagcgcg
aaggtactgttgtatggtttgccaatcgtacaggatcgtacggtgcagtggggtcgtatc
aatccgctggaggcccgtgattttctgattcgtcagggtttggtcgagggcgatattcag
cagcggttctcgtatgacgatttcattgcgaagaatcgcgatgtgttggaggatgccgcc
gatgacgcgagtcgtacacgtcagatggcgcagacggtcagtgatgaggatctgttcgat
ttttataattcggtgattcccaatactgtcacgtcggttgcggatcttgcgaaatggtgg
aagtcaaagcatgatgagcagccggatttgttggattttgatccggagaaggtggagcgt
cttgctgatgccgagtcagtgtcgttggctgattatccggatcattggcatacgttaggt
acggacggctcccctatcgatttgcggttgagttatgtgtatgatccgcatgatccaaac
gatggcgtgaccgtgcatgtgccgttgaaggtgttgtctcgtttgacaccggaacaattc
acgtggaatgttcccggattgttggatgagttgattgtcggcatgatcaagtcgttgccg
aagacgttgcgcgtgcagtttgttcccgctcctgatacggctcgtaagattcgtgcatgg
attgatgagaggtatccggatctgcctggttccggtaaccagcagaagccgaatcttgct
cctgccaatgcagagggtgtggccgcgtggccggatctgcctcatacgttcacgcaggcg
gcaatcagcatcgttggcgcgcagattcaccctgaagtgttgactggtgaattgtggagc
aagctcacgccgtatttgcgcgtgacgttctcggtggagcagcagttgcctccgagtcgc
aagagtcagcatggcaggcgtcatgcgcggggccctgtcaaggtgcttggctcgggcaaa
tcgttggtggagttgcagcgcaagtttgcggagcaagctgaggcttccgcacggcagatg
gtaaagaagcaggcggaaaacgctggaaatcagggcaagcttgtggagcaggccaatctg
ctgcataaggctggtgccactaccgaaactcgttccaccatgctgtggcgcggtgcgctt
gatgttttgcgtatgccgagcgaacgtatttcgtcgcgttggttgggtgcggaggcgttg
atgttggcgtccgcgccatatcagtccacgaaggatcttactgaggatctgcagttggct
gcggtgaagcgtttgctgccgaatgttgacgaattgccggatgatgaggcgttggcgaat
gcggtgcttgatgtgcgtgaagtgttcgaagataccgtatacgcggttgcgcatgatgtg
atcgctattttgaagcggtatgcggaggttgataaagccgtgtcaggcaaggctgatctg
ccgatgttgagtgttttgcagtcgattcgtgagcatatcgccacgctggtgtatccggga
ttcattggtaagactcccccagatgcgttggcgtcgattgaacggtatctgcatgctgac
atgcttcgtttaggtaaggcgaagaacgacaagaatcgtgatgtgcgttgggcttgggag
gctgatgaggccaagcagttggctgacaaggccatggcgaaggccgagcgtgagcctgca
ggtccgcgtcatgaggcgttgatgaagcaggcggccaccgcacgttggatgcttgaggaa
ttctacgtatcactgtgggcgcaggaactgggcacgccgaagccaatcagcctgcagcgc
atcaagaaagcgttgagctaa
DBGET
integrated database retrieval system
