Brachybacterium kimchii: M4486_18050
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Entry
M4486_18050 CDS
T08303
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bki
Brachybacterium kimchii
Pathway
bki03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M4486_18050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bki03400
]
M4486_18050
Enzymes [BR:
bki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M4486_18050
DNA repair and recombination proteins [BR:
bki03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M4486_18050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UQN29514
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Position
3964550..3967090
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AA seq
846 aa
AA seq
DB search
MSAREQKSAREQKVEVDGRTLRLTHLDKVMYPSTGTTKGEVIDYYRRAAGVMVPQAARRP
ATRKRWVDGVGTAEHPGKVFFRKDLEDSAPDWVPRADLEHHDGISTYPLVDEAAVLVWLA
QLAALEIHTPQWRFDAEGEPARPDRLVLDLDPGEGAGLGDCAQVALWCRELLDEMGLDSY
PVTSGSKGIHLYAPLDGTSAADEVAEVAHRLARALEDEHPDQVVSDMKRSLRRGKVLVDW
SQNNGHKTTVCPYSLRGRERPTVAAPRTWDEIEGSSLAQLGFEEVLARIEDGTDPLAALG
LEQHDSSAGGEAPADDEASAGAADDRLRTYRSKRDARRTPEPVPDAAGEGPQGRADAVRR
ALEAEDPMFVIQEHHASSLHWDFRLQHDGVLVSWAVPKGPPLETDVNRLAVQTEDHPLEY
GTFEGSIPEDEYGGGEVTIWDSGLVEIEKWREGREVIAVCRGREDGGLGGVPRRFAFIHT
GGMGRGARSAAAKEKAKADWLLHLMKDQPEEGSAGAHEETDADDRISPMLATLGAREDID
EDDWAFEMKWDGVRAIATITPAGVRLTSRGGKDVTAAFPELGELADAVGGAGSGTGRIVL
DGEIVALDSHDRPSFSRLQRRLGLTSRRDVERAQKETEVHLMVFDLLEADGRSLLRTPYR
ERREALFAAVDPTEHVKLPHADHGDVDHAIAVSQELQLEGVMAKKESSVYQPGRRARTWI
KIKNAHHQEVVVVGWREGRGARAGGIGSLLLAVPDEDGNLHYVGRVGTGFSEDDLEHARE
RLRSRARKTPPVSGVPSADARDAHWVRADLVGEVRHAERTPDDRLRQPVWRGWRPDKDAD
EVRWES
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcacgggagcagaagtccgcacgggagcagaaggtggaggtcgacggccgcacg
ctgcggctcacgcacctcgacaaggtcatgtatccctcgaccgggaccaccaagggcgag
gtcatcgactactaccggcgtgccgccggggtgatggtgccgcaggccgcccgccgaccg
gcgacgcggaagcgatgggtcgacggggtcggcaccgctgagcatccgggcaaggtcttc
ttccgcaaggacctcgaggactccgcgcccgactgggtgccgcgagcggacctcgagcac
cacgacggcatctccacctaccccctggtggacgaggcggccgtgctggtgtggctcgcc
cagctcgcggccctcgagatccacaccccccagtggcggttcgacgccgagggcgagccg
gcccgccccgaccggctcgtgctcgatctcgatccgggagagggcgccggtctcggcgac
tgcgcccaggtggcgctgtggtgccgcgagctcctggacgagatgggactcgactcctat
cccgtgacgtccggctcgaaggggatccacctctacgccccgctggacgggacctccgcc
gccgacgaggtcgccgaggtcgcgcaccgtctcgcgcgagccctcgaggacgagcacccc
gaccaagtggtcagcgacatgaaaaggtccctgcgccgagggaaggtcctggtcgactgg
tcgcagaacaacgggcacaagaccacggtgtgcccgtactccctgcgcggcagggagcgt
cccacggtcgccgcgccccgcacctgggacgagatcgagggctcctcgctcgcccagctc
gggttcgaggaggtcctcgcgcgcatcgaggacggcaccgatcccctcgcggcgctcggc
ctcgagcagcacgactcgtcggccgggggagaggcgccggccgacgacgaggcgtcggcc
ggggccgcggacgatcgactgcgcacataccgctccaagcgcgacgcgcgccgcactccg
gagcccgtccccgatgcggcaggggaagggccgcaggggcgggccgatgccgtgcggcgc
gcgctcgaggcggaggacccgatgttcgtgatccaggagcaccacgcctcgagcctgcac
tgggacttccggctccagcacgacggggtgctcgtctcctgggccgtccccaagggaccg
ccgctcgagacggacgtgaaccggctggcggtgcagacggaggaccatccgctcgagtac
ggcaccttcgaggggagcatcccggaggacgagtacggcgggggagaggtgaccatctgg
gacagcggcctcgtcgagatcgagaagtggcgcgaggggcgcgaggtcatcgccgtctgc
cgcggacgcgaggacggagggctcggaggcgtgccgcgccgcttcgcgttcatccacacg
ggaggcatgggccgcggtgccaggagcgcggccgcgaaggagaaggcgaaggccgactgg
ctcctgcacctcatgaaggaccagcccgaggagggatcggcaggtgcccacgaggagacc
gacgccgacgaccggatcagcccgatgctcgcgacgctcggcgcgcgcgaggacatcgac
gaggacgactgggccttcgagatgaaatgggacggtgtgcgcgcgatcgccacgatcacc
ccggccggtgtgcgcctgaccagccgcggcggcaaggacgtcaccgccgccttccccgag
ctcggagagctcgccgacgcggtgggcggcgccggctccgggacgggacgcatcgtcctg
gacggtgagatcgtcgccctggactcccacgaccggccctcgttctcgcgcctccagcga
cgtctgggactgacgtcccggcgcgacgtggagcgggcgcagaaggagacggaggtccac
ctgatggtcttcgacctgctcgaggccgacggcaggtcgctgctgcgcacgccgtacagg
gaacggcgcgaggccctcttcgcggccgtcgaccccaccgagcacgtgaagctcccgcac
gcggaccatggggacgtcgaccacgcgatcgccgtctcccaggagctccagctcgagggc
gtgatggcgaagaaggaatcgagcgtctaccagcccgggcgccgtgcccgcacctggatc
aagatcaagaacgcccaccaccaggaggtcgtcgtcgtgggctggcgcgaaggccggggc
gcacgcgcaggcgggatcggctccctgctgctggccgtcccggacgaggacgggaatctg
cactacgtcggccgcgtgggcaccgggttcagcgaggacgacctcgagcacgcgcgagag
cgcctccgctcgcgcgcgcggaagacgccgccggtgagcggcgtcccgagcgccgacgcc
cgcgatgcccactgggtgcgcgccgacctcgtgggcgaggtgcgccatgccgagcgcacc
cccgacgacaggctgcgccagcccgtgtggagggggtggcgtcccgacaaggacgccgac
gaggtgcgctgggagtcctga
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