Blastomonas sp. RAC04: BSY18_2878
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Entry
BSY18_2878 CDS
T04450
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
blas
Blastomonas sp. RAC04
Pathway
blas03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
blas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BSY18_2878 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blas03400
]
BSY18_2878 (ligD)
Enzymes [BR:
blas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BSY18_2878 (ligD)
DNA repair and recombination proteins [BR:
blas03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BSY18_2878 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AOG01715
UniProt:
A0A1B3N8M4
LinkDB
All DBs
Position
complement(3049799..3052276)
Genome browser
AA seq
825 aa
AA seq
DB search
MAKAADLLADYNAKRDFKRTPEPAGKVSKAAGNRFIVQKHDATRLHFDLRLEIDGVLKSW
AVTKGPSANPEDKRLAVRTEDHPMSYADFEGVIPQGAYGGGTVMLWDTGSWAPIAGKSAH
DIEEGHLHFTLDGQRMKGEWLLVRMKPRPGEKRENWLLRKIADRWAGGTDDLVGRALTSV
LSDRTMAQIAAGEEGLKPDLGAKPASTAKPASKRRSKGTPPKFRALQLATLVDAVPAGHD
WIHEIKYDGYRAAVAAAGSDVRIYTRNGLDWTDKFAPLVAHIAALDLPPCLIDGEIVAFD
ANGNPDFSALQAVLKRGKGAQDAKTELQFFAFDLIEQDGKSLTTLGNLERKERLEALLHD
AAPPIAVADHVIGAGERLYAAMCSAGQEGIISKRAESGYAGKRSTNWVKVKCTRRQEFVI
VGWNPSRAKGRPFASLLLAQHEGDALVYKGNVGTGFSADSMDELARSFAKLARKTAPLPV
EGAAARHAHWLKPELVAEIAFAEFTAGGVVRHASFLGLRGDKAARDVTPEVARPAPADHD
VVTITSRDRVIFPEAKKTKGDLADYYAAVAPVMVMHAARRPISLVRCPQGRAKACFFQKH
DSGSFGEHVHHISIREKDGGHEDYLYVEDAAGLLACVQMGTIEFHGWGSQIAAVEHPDRM
VFDLDPDEGLDFADVRKAALDIRGHLADIGLVSFAMLTGGKGVHVVVPLDPGHSWDAHKA
FARHFAEALSMAEPDRFVATMSKAKRKGRIFIDWLRNQRGSTAVMPYSARARPHAPVAVP
IGWEALAEAKSASQYTIDDSSLLLERAARSDLQGWGFAAQALPEY
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggctgccgatctgcttgccgactataacgccaagcgcgatttcaagcggacg
cctgagcccgccggcaaggtgtcgaaggccgcaggcaaccgcttcatcgtgcagaagcat
gatgccacgcggctgcacttcgatctgcggctcgagatcgacggcgtgctcaagagctgg
gcggtcaccaaggggcccagcgccaatcctgaagacaaaaggctggcggtgcgcaccgag
gaccatccgatgtcgtacgccgatttcgaaggcgtgatcccccagggtgcctatggcggc
ggcacggtgatgctgtgggacaccggcagctgggcaccgatcgccggaaaaagcgcgcac
gacatcgaggaggggcatctccacttcacgctcgacggccagcggatgaagggcgaatgg
ctgctggtgcgaatgaagccgcgccccggcgaaaagcgcgagaactggctgctgcgcaag
atcgccgacagatgggccggtggcacggatgatctggttggccgcgcgctcaccagcgtt
ctcagcgaccggacgatggcgcagatcgctgcgggggaagaaggcctgaaaccagacttg
ggcgcaaagcctgccagcacggccaaacccgcatccaaacgccggtccaagggcacgccg
cccaagttccgtgccctgcagctggcgacattggtcgatgccgtccctgccgggcacgac
tggatccacgagatcaagtatgacggctatcgcgccgccgtcgccgcagcgggcagcgac
gtgcgcatctacacgcgcaacggactggactggaccgacaagtttgcgccgctggtcgcc
cacatcgccgcgctcgatctgccgccctgcctgatcgatggcgagatcgtcgcgttcgac
gccaacggcaaccccgatttctctgcgctgcaggccgttctcaaacgcggcaagggcgcg
caggacgcaaagaccgaattgcagttcttcgccttcgacctgatcgagcaggacggcaag
tcgttgaccacgctgggcaatctcgagcgcaaggaacggctcgaagcgctgctgcatgat
gccgccccgccgatcgcggtggccgatcatgtcattggtgccggagagaggctgtacgcc
gcaatgtgcagtgcggggcaggaggggatcatctccaagcgcgccgaatcgggctatgcc
ggcaaaaggtcgaccaactgggtcaaggtgaagtgcacccgccgccaggagttcgtcatc
gtcggctggaacccctccagggcgaaggggcggccgttcgcctcgctgctgctcgcgcag
cacgagggcgatgcactggtctacaagggcaacgtcggtacggggttcagcgccgatagc
atggacgagcttgcgcggagcttcgcgaaactcgcccgcaagaccgcgccgttgcccgta
gagggtgccgccgcccgccatgcgcactggctgaagcccgagcttgtcgccgagatcgcg
tttgcggaattcaccgcgggcggcgtggtccgccatgcgagctttctgggcctgcgcggc
gacaaggcagcgcgcgatgtgaccccggaggtcgcacggcccgcgccagccgaccatgat
gtggtcacgatcaccagccgcgatcgcgtcatcttccccgaagcgaagaagaccaagggc
gaccttgcggattattatgccgcggtcgctccggtcatggtgatgcatgctgcgcgccgc
ccgatcagcctggtgcgctgtccgcaggggcgcgccaaggcgtgcttcttccagaagcat
gattcgggctcgttcggcgagcatgtccaccatatcagcattcgcgagaaggacggcggg
cacgaagactatctgtatgtcgaggatgccgccgggctgctggcctgtgtgcagatgggg
acgatcgagttccacggctggggcagccagattgcggcggtcgagcatcccgaccggatg
gtgttcgatctcgatcccgacgagggtctcgattttgccgatgtcagaaaggccgcgctc
gatattcgcgggcatcttgccgacataggcctggtcagctttgcgatgctcaccggcggc
aagggcgtgcatgtcgtggtgccgctcgatcccgggcacagctgggatgcgcacaaggcc
tttgcgcgccactttgccgaagcgctcagcatggccgagcccgaccgctttgttgcaacc
atgagcaaggccaagcgcaagggcaggatcttcatcgactggctgcgcaaccagcggggc
agcacagccgtgatgccctattcggcccgcgcccgcccgcatgcgccggtggcggtgccg
atcggctgggaagcgctggcagaagcgaagagcgcgagccagtacacgatcgacgacagc
agcttgctgctcgagcgggcggccaggtccgaccttcagggctggggatttgcagcgcag
gccctgcccgaatactga
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