KEGG   Blastomonas sp. RAC04: BSY18_2878Help
Entry
BSY18_2878        CDS       T04450                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
blas  Blastomonas sp. RAC04
Pathway
blas03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:blas00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BSY18_2878 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:blas03400]
    BSY18_2878 (ligD)
Enzymes [BR:blas01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BSY18_2878 (ligD)
DNA repair and recombination proteins [BR:blas03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BSY18_2878 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AOG01715
UniProt: A0A1B3N8M4
LinkDB All DBs
Position
complement(3049799..3052276)
Genome map
AA seq 825 aa AA seqDB search
MAKAADLLADYNAKRDFKRTPEPAGKVSKAAGNRFIVQKHDATRLHFDLRLEIDGVLKSW
AVTKGPSANPEDKRLAVRTEDHPMSYADFEGVIPQGAYGGGTVMLWDTGSWAPIAGKSAH
DIEEGHLHFTLDGQRMKGEWLLVRMKPRPGEKRENWLLRKIADRWAGGTDDLVGRALTSV
LSDRTMAQIAAGEEGLKPDLGAKPASTAKPASKRRSKGTPPKFRALQLATLVDAVPAGHD
WIHEIKYDGYRAAVAAAGSDVRIYTRNGLDWTDKFAPLVAHIAALDLPPCLIDGEIVAFD
ANGNPDFSALQAVLKRGKGAQDAKTELQFFAFDLIEQDGKSLTTLGNLERKERLEALLHD
AAPPIAVADHVIGAGERLYAAMCSAGQEGIISKRAESGYAGKRSTNWVKVKCTRRQEFVI
VGWNPSRAKGRPFASLLLAQHEGDALVYKGNVGTGFSADSMDELARSFAKLARKTAPLPV
EGAAARHAHWLKPELVAEIAFAEFTAGGVVRHASFLGLRGDKAARDVTPEVARPAPADHD
VVTITSRDRVIFPEAKKTKGDLADYYAAVAPVMVMHAARRPISLVRCPQGRAKACFFQKH
DSGSFGEHVHHISIREKDGGHEDYLYVEDAAGLLACVQMGTIEFHGWGSQIAAVEHPDRM
VFDLDPDEGLDFADVRKAALDIRGHLADIGLVSFAMLTGGKGVHVVVPLDPGHSWDAHKA
FARHFAEALSMAEPDRFVATMSKAKRKGRIFIDWLRNQRGSTAVMPYSARARPHAPVAVP
IGWEALAEAKSASQYTIDDSSLLLERAARSDLQGWGFAAQALPEY
NT seq 2478 nt NT seq  +upstreamnt  +downstreamnt
atggctaaggctgccgatctgcttgccgactataacgccaagcgcgatttcaagcggacg
cctgagcccgccggcaaggtgtcgaaggccgcaggcaaccgcttcatcgtgcagaagcat
gatgccacgcggctgcacttcgatctgcggctcgagatcgacggcgtgctcaagagctgg
gcggtcaccaaggggcccagcgccaatcctgaagacaaaaggctggcggtgcgcaccgag
gaccatccgatgtcgtacgccgatttcgaaggcgtgatcccccagggtgcctatggcggc
ggcacggtgatgctgtgggacaccggcagctgggcaccgatcgccggaaaaagcgcgcac
gacatcgaggaggggcatctccacttcacgctcgacggccagcggatgaagggcgaatgg
ctgctggtgcgaatgaagccgcgccccggcgaaaagcgcgagaactggctgctgcgcaag
atcgccgacagatgggccggtggcacggatgatctggttggccgcgcgctcaccagcgtt
ctcagcgaccggacgatggcgcagatcgctgcgggggaagaaggcctgaaaccagacttg
ggcgcaaagcctgccagcacggccaaacccgcatccaaacgccggtccaagggcacgccg
cccaagttccgtgccctgcagctggcgacattggtcgatgccgtccctgccgggcacgac
tggatccacgagatcaagtatgacggctatcgcgccgccgtcgccgcagcgggcagcgac
gtgcgcatctacacgcgcaacggactggactggaccgacaagtttgcgccgctggtcgcc
cacatcgccgcgctcgatctgccgccctgcctgatcgatggcgagatcgtcgcgttcgac
gccaacggcaaccccgatttctctgcgctgcaggccgttctcaaacgcggcaagggcgcg
caggacgcaaagaccgaattgcagttcttcgccttcgacctgatcgagcaggacggcaag
tcgttgaccacgctgggcaatctcgagcgcaaggaacggctcgaagcgctgctgcatgat
gccgccccgccgatcgcggtggccgatcatgtcattggtgccggagagaggctgtacgcc
gcaatgtgcagtgcggggcaggaggggatcatctccaagcgcgccgaatcgggctatgcc
ggcaaaaggtcgaccaactgggtcaaggtgaagtgcacccgccgccaggagttcgtcatc
gtcggctggaacccctccagggcgaaggggcggccgttcgcctcgctgctgctcgcgcag
cacgagggcgatgcactggtctacaagggcaacgtcggtacggggttcagcgccgatagc
atggacgagcttgcgcggagcttcgcgaaactcgcccgcaagaccgcgccgttgcccgta
gagggtgccgccgcccgccatgcgcactggctgaagcccgagcttgtcgccgagatcgcg
tttgcggaattcaccgcgggcggcgtggtccgccatgcgagctttctgggcctgcgcggc
gacaaggcagcgcgcgatgtgaccccggaggtcgcacggcccgcgccagccgaccatgat
gtggtcacgatcaccagccgcgatcgcgtcatcttccccgaagcgaagaagaccaagggc
gaccttgcggattattatgccgcggtcgctccggtcatggtgatgcatgctgcgcgccgc
ccgatcagcctggtgcgctgtccgcaggggcgcgccaaggcgtgcttcttccagaagcat
gattcgggctcgttcggcgagcatgtccaccatatcagcattcgcgagaaggacggcggg
cacgaagactatctgtatgtcgaggatgccgccgggctgctggcctgtgtgcagatgggg
acgatcgagttccacggctggggcagccagattgcggcggtcgagcatcccgaccggatg
gtgttcgatctcgatcccgacgagggtctcgattttgccgatgtcagaaaggccgcgctc
gatattcgcgggcatcttgccgacataggcctggtcagctttgcgatgctcaccggcggc
aagggcgtgcatgtcgtggtgccgctcgatcccgggcacagctgggatgcgcacaaggcc
tttgcgcgccactttgccgaagcgctcagcatggccgagcccgaccgctttgttgcaacc
atgagcaaggccaagcgcaagggcaggatcttcatcgactggctgcgcaaccagcggggc
agcacagccgtgatgccctattcggcccgcgcccgcccgcatgcgccggtggcggtgccg
atcggctgggaagcgctggcagaagcgaagagcgcgagccagtacacgatcgacgacagc
agcttgctgctcgagcgggcggccaggtccgaccttcagggctggggatttgcagcgcag
gccctgcccgaatactga

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