Beggiatoa leptomitoformis: AL038_09580
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Entry
AL038_09580 CDS
T04090
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
blep
Beggiatoa leptomitoformis
Pathway
blep03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
blep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AL038_09580 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blep03021
]
AL038_09580 (rpoC)
03400 DNA repair and recombination proteins [BR:
blep03400
]
AL038_09580 (rpoC)
Enzymes [BR:
blep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AL038_09580 (rpoC)
Transcription machinery [BR:
blep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AL038_09580 (rpoC)
DNA repair and recombination proteins [BR:
blep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AL038_09580 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ALG67916
UniProt:
A0A2N9YH73
LinkDB
All DBs
Position
complement(2316506..2320738)
Genome browser
AA seq
1410 aa
AA seq
DB search
MKDLMNLLNSQGHIEEFDRICIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVVCEKCGVEVTQAKVRRERMGHIELASPVAHIWYLKSL
PSRMGLILDLTLRDIERILYFEAYVVIEPGLTSLERGQLLTEEQYLDALEEHGDEFDARM
GAEAIYELLRTLDLAGEVNRLREEINGTNSDTKIKKLNKRLKLIESFLHSGNRPEWMVLK
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGTNKLPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFVFGKLELRGLATTIKAAKKMVEREGPEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA
RALMMSSNNVLSPANGEPIIVPSQDVVLGLYYMTRLRVNALGEGMKFADVDEVHRAYENR
VVALQAEIQVRIKEVLFDEKGARVERTVLRKTTVGRALLSEIIPEGLPFSVVDCDLSKKA
ISKLINTSYRRVGLKDTVVFADRLMYTGFSFATRAGISIGIKDMVIPDEKPGIISSAERE
VTEIQNQYASGLITDGERYNKVIDIWSRTNDKLAKAMMTKLADEPVKDLDGNIVVDKDTS
KVKLQRSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQ
YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVILEKDCGTHNGLEMTPLIEGGDV
VEPLRERVLGRIVAEDIFVPEQEEAVVKRGTLLDETWVEKLDALGIDRVKVRSAISCEAR
YGICAHCYGRDLGRGHLVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAVAINNIE
VKAKGIAKLHNIKTVEQQNAEGVARVVAVSRSGELAIQDDNGRERERYKVPYGAVFTIRD
GDPVEAGQLVASWDPHTHPIITEVKGKINFTDVIEGVTVNRQTDEYTGLTSIVVTDPKQR
PSNAKDMRPMVKLVSEDGQDLNIIGTQIPATYFLPPRAIITVEDGQAVNVGDVIARLPQE
SSKTRDITGGLPRVADLFEARIPKEPSVLAEYSGTVSFGKDTKTKQRLIITSKDGQQYEI
PIPKWRHVNVFEGEHVEKGETLVDGAPNPHDILRLLGVAELARYIVNEVQEVYRLQGVKI
NDKHIEVIVRQMLRKVSIIDPGDTRLLKGEQIERAKLYEENERVRVEDKALSTWEPMLLG
ITKASLATESFISAASFQETTRVLTEASVSGKYDDLRGLKENVIVGRLIPAGTGLAYHEE
RRAQRRKAQGLGSTTVSPEATTNTENTSET
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttaatgaatttgttgaacagccaagggcatatagaagaatttgaccgcatt
tgtatcggtctagcctcccccgagaaaattcgctcttggtcttatggggaagtcaaaaaa
ccagaaaccatcaactaccgcacatttaaacctgagcgggatggattgttttgcgcaaaa
atcttcggacctgtcaaagattacgaatgcttatgcggcaaatacaaacgcttaaaacat
cgtggtgttgtttgcgaaaaatgcggcgtggaagttacccaagccaaagtccgtcgcgaa
cgcatgggacacatcgaattagccagccctgtcgcgcatatttggtacttaaaatcttta
ccctctcgcatgggcttgattttagacttaactctgcgtgacattgaacgtattctctat
tttgaagcctacgttgttattgaacccggtttaacctctttagaacgcggtcaattactg
acagaagagcaatatttagatgccttagaagaacatggcgacgaatttgacgcacgcatg
ggtgcggaagccatttatgaattacttcgtaccctagatttagcgggagaagtcaaccgc
ttacgcgaagaaattaatggcacaaactccgataccaaaatcaaaaagctcaacaaacgc
ttaaaactgattgaatccttcctacactcaggcaaccgccctgaatggatggttttaaaa
gtcttacccgtgttaccacctgaattacgtcctttagttcccttagatggtgggcgtttt
gcgacttctgacttaaacgatttatatcgtcgtgttattaaccgtaacaaccgtttaaaa
cggctgctcgacttaaacgcgcctgacattatcgtgcgtaacgaaaaacgcatgttacaa
gaagccgtcgacgcactgttagacaacggacggcgtgggcgcgcgattacaggcacgaac
aaactgcctttaaaatcccttgctgacatgattaaagggaaacaagggcgtttccgtcaa
aacttactcggtaaacgcgtcgactactctggtcgttccgttatcgtggtcggccctacc
ctgcgcctgcatcaatgcgggttgccgaaaaaaatggcgttggaactcttcaagcctttt
gtcttcggcaaattagaattgcgtggtttagcgacaacgattaaagccgctaagaaaatg
gtggagcgcgaaggccctgaagtgtgggatgtattagaagaagtcattcgtgaacatcct
gtattactcaaccgcgcaccaaccctgcaccgtttagggattcaagcctttgagcctgtt
ttgattgaagggaaagcgattcaactgcatccgctggtatgtaccgcctttaatgccgac
ttcgacggcgaccaaatggccgtccatgttcccttatccattgaggcacaattagaagca
cgtgctttaatgatgtcttctaacaacgtcttatcacctgcgaatggtgaacctattatt
gttccttcacaggacgtggtactaggcttgtactatatgacccgcttgcgtgtgaatgcg
ctgggtgaaggtatgaaattcgccgacgttgatgaagtgcatcgtgcctatgaaaatcga
gtcgttgctttacaagccgaaattcaagtgcggattaaagaagtcctctttgatgaaaaa
ggcgcgcgcgtagaaagaacggtgttgcgtaaaacgacggtcggacgtgccttattatct
gaaatcatccctgaaggcttgcccttctctgttgttgattgcgacttaagcaaaaaagcg
atttctaaactgattaataccagctatcgccgtgttggcttaaaagataccgttgttttt
gctgaccgtttgatgtacacgggattttcttttgcaacccgtgcggggatttccattggg
attaaagacatggtcattcctgatgaaaaaccgggaattatttcgtccgcagaaagagaa
gtaacagaaattcaaaaccaatatgcctcaggtttaatcactgatggtgaacgttacaac
aaagttatcgatatttggtcacgtaccaatgacaaattggcaaaagccatgatgaccaag
ttggcagacgaacccgttaaagacttagacggcaatattgttgtagataaagatacaagc
aaagtaaaactgcaacgttctttcaactccatctatatgatggcggactctggggcgcgg
ggttctgccgcgcagattcggcaattagctgggatgcgggggttaatggcaaagcctgac
ggctctatcattgaaacgcccattacggcaaacttccgtgaaggtttggatgttttacaa
tactttatctccactcacggcgcgcggaaaggcttagcagataccgcgttaaaaactgca
aactcaggttacttaacccgtcgtttagtggatgttgcacaagacttagtgattttagaa
aaagactgtggcacacataatggtttagaaatgaccccattaattgaagggggcgatgta
gtcgaacccttgcgtgaacgggtattaggacggattgttgctgaagatatttttgttcct
gaacaagaagaagccgtcgtcaaacgtggcacgctcttagacgaaacttgggtagaaaaa
ctcgacgctttagggatagaccgcgttaaagttcgttccgccatcagttgcgaagcccgt
tatggtatttgcgcccattgctatggacgtgatttagggcgtgggcatcttgtcaatatg
ggcgaagcggttggcgttattgccgcacaatctattggtgaacccggtacacagctcacc
atgcgtaccttccatattgggggggctgcttctcgagctgttgccatcaacaatattgaa
gtgaaggcgaaagggattgcgaaacttcacaacatcaaaaccgttgagcaacaaaacgct
gaaggagtcgcgcgagttgttgccgtttctcggtcaggtgagttagccatacaagacgat
aatggacgcgagcgtgaacgctacaaagtgccttacggtgcggtgttcactattcgtgat
ggtgatcctgtggaagcaggacaattagtcgccagttgggacccccatacccacccaatt
atcactgaagtaaaagggaaaattaattttacagatgtgattgaaggggtaaccgtgaac
cgtcaaactgacgaatacacgggtttaaccagtattgtagtgactgacccgaaacaacgt
ccgtccaacgcaaaagatatgcgtccaatggtgaaattagtgagcgaggatgggcaagat
ttaaacatcatcggcactcaaattcccgcaacatatttcttgccaccccgcgcaattatt
acggtagaagatgggcaagcagtgaatgttggcgatgttattgctcggttaccgcaagag
tcctcaaaaacccgtgatattacagggggcttgccacgtgtcgcggacttgtttgaagcg
cgtattcctaaagaaccctctgttttggcagaatacagcggtaccgttagttttggtaaa
gataccaagacgaaacaacgtttaatcatcacctctaaagatgggcaacaatatgaaatt
cccattccaaagtggcgacatgtcaacgtgttcgaaggggagcatgtagaaaagggtgaa
acgttagttgacggcgcacctaatccacatgatattttacgtctgcttggcgtggctgaa
ttagcccgttacattgtcaacgaagtgcaggaagtttaccgtttacaaggcgtaaaaatt
aatgataagcacatcgaagttatcgtgcgtcaaatgttgcgtaaagtatccattattgac
cccggcgatacccgtttactcaagggtgaacagattgaacgtgcgaagttatatgaagaa
aatgaacgtgttcgtgtagaagataaggcattatcaacttgggaacccatgttattaggg
attaccaaagcctcattggcaacagaatcctttatttctgccgcctctttccaagaaact
acgcgcgtattgacggaagcctcagttagcggcaagtacgatgatttacgtggcttaaag
gaaaatgtgattgtagggcgtttaattcctgcgggaacaggcttggcgtatcatgaagaa
cgtcgtgcacaacggcgcaaagcgcaaggcttaggtagcacaaccgttagccctgaagcg
acaacaaatacagaaaatacttcagaaacttaa
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