Borrelia miyamotoi LB-2001: I871_01215
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Entry
I871_01215 CDS
T02797
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bmo
Borrelia miyamotoi LB-2001
Pathway
bmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I871_01215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmo03021
]
I871_01215
03019 Messenger RNA biogenesis [BR:
bmo03019
]
I871_01215
Transcription machinery [BR:
bmo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
I871_01215
Messenger RNA biogenesis [BR:
bmo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
I871_01215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA
Spore_III_AA
DUF1269
AAA_18
AAA_22
Rho_N
AAA_25
OB_RNB
DUF5442
Motif
Other DBs
NCBI-ProteinID:
AGT27222
LinkDB
All DBs
Position
complement(233900..235444)
Genome browser
AA seq
514 aa
AA seq
DB search
MDKKCEEFDLEDEMKRLNSSKESKTEDHAKKKIVKVVTKKESISGGLKKSNTDKLRESNG
ILSNFDYDMPASDLESSIKTFEQSNVINFLGGKDFIVIDSLYDKPITEIRKIVEGLGTNH
TIAVTMKKTELIFLLVKILTEHNINVLFTGVLDVLSDGYGFLRTASNSYLSGGNDVYVSP
SQIRLFNLRTGDILYGQIRSPRDGERFFAMIKIKSINDQDPTFAQNRIPFDNLTPLYPSS
KLDLEYENCNISTRLINLFAPIGKGQRALIVSPPKAGKTTLLQKIANAITTNYSDIVLMI
LLIDERPEEVTDMIRGVKGEVIASNFDEQASRHVQVAEMVIEKAKRLVENKKDVVILLDS
ITRLARAYNQTMPTSGKILSGGVDSNALHKPKRFFGSARNIEEGGSLTIIATALVDTGSK
MDEVIFEEFKSTGNMELILDRSLADRRLFPAINIKKSGTRKEELLLSEEERSKILLIRKI
LSGVDDYEGVEALVEKMKKSKNNEIFLKTMSNGD
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaatgtgaggagtttgatttagaggatgaaatgaagcgtttaaattcttct
aaggaatcaaaaactgaggatcatgctaagaaaaagatagttaaagttgtaactaaaaaa
gaatctatttctggcggacttaaaaagtctaatactgataaattaagagaatctaatgga
atcttatcaaattttgattatgatatgcccgcttctgatttagaaagcagtattaagact
tttgaacaaagcaatgttattaattttttaggtggtaaagattttatagtgattgatagt
ctttatgataaaccaattactgaaatcaggaagattgttgagggtcttggtactaatcat
actattgcagtaacaatgaagaagacggaattaatatttttgcttgttaagatattaacc
gaacataatattaatgttttgtttactggcgttcttgatgtattaagcgatggatatggc
tttttgcgtacagcatctaattcttatctatcaggaggtaatgatgtttatgtttctccg
tctcaaattagactttttaatttaaggacaggtgatattttatatggacaaattaggtct
ccaagagatggtgagagattttttgcaatgattaaaattaaaagcattaatgaccaggac
cctacatttgcacagaataggataccttttgataatttaacacctttgtatcctagttct
aagttggatcttgaatatgaaaattgtaatatttccacaagacttattaacctttttgca
cctattggaaaaggacaaagagcattaatagtctctcctccaaaggctggaaagactact
ttgcttcaaaaaatagctaatgcaattacgactaattattcagacattgttttaatgatt
ttactcatagatgagagacctgaagaggttactgacatgattcgtggtgttaagggcgag
gttattgcatctaattttgatgagcaagctagcaggcacgtgcaggttgcagaaatggtt
attgagaaagcaaaaagacttgttgaaaataaaaaagatgttgttattcttttagattct
attacaagacttgcaagggcttataatcaaactatgccaacttctggcaagatactttct
ggaggagttgattctaatgctttacataagccaaaaagattttttggttctgctagaaat
attgaggaaggtggaagtcttactattatagctacagctttagttgatactggaagtaag
atggatgaagttatatttgaggaatttaaaagtactggtaacatggagttgattcttgac
agaagtttggcagatagaaggctttttcctgctatcaatattaagaaatcaggaacaaga
aaagaagagttactcttgagtgaagaagagcgatctaagattttgcttattagaaaaatc
ttaagtggtgttgatgattatgaaggagttgaggctttagttgagaagatgaaaaaaagt
aaaaataatgagattttcctaaagaccatgagtaatggggactag
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