Brassica napus (rape): 106369836
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Entry
106369836 CDS
T04128
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106369836
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106369836
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Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Motif
Other DBs
NCBI-GeneID:
106369836
NCBI-ProteinID:
XP_013665395
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Position
A10:14987084..14990491
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AA seq
434 aa
AA seq
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MKKSSLFFVLLCLFQISKLDFCLAGSVHMVNNNGHERHRFISVTDFGAVCDGKTDDTQAF
LKAWEAVCNGFSNKSFLVPLGKTCLLKPLTFAGPCTSSSITFVIRGNIVAPGYTWNVGNF
PAWISFDSINGLVVKGGGVKGGGTLDSRGSVWWGSEHAQDKESPTAMHFNNCNGLRMYNL
QHLNSPRNHIGLTGSKNISISGLNLTAPGDSPNTDGIDISRCIGVDIRDSVISTGDDCIA
INSGSSYINITGLFCGPGHGISVGSLGRNGEFASVEEVRVKNCTLSNTMNGVRIKTYQNG
LGYARKISFEDIRMVDSKNPIIIEQNYLNRGKIEEVSFENSNYQNRGGKNRFYKTESGNG
RGVRVSDVRYSRIYGSSASDDAVTFNCNADLGCEDIVMDHVDIVSAKAGHAVSASCKNVR
GSYFSSPVSCIKKH
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtcttcgttgttcttcgtattgctatgtttgtttcaaataagcaaattagat
ttctgcttagcaggaagtgttcatatggttaacaacaatggacatgaacgtcatagattc
ataagtgtaactgatttcggagctgtgtgcgatgggaagaccgatgacactcaggcattt
cttaaggcatgggaagctgtatgtaacggattcagtaataaaagctttctagtgcctcta
ggaaaaacgtgcctgcttaagcctcttacgttcgcaggtccttgcacgtcttcctctatc
acctttgtgataagaggcaatattgttgcaccgggttacacctggaacgtgggaaatttc
cctgcatggattagttttgatagtatcaacggtctagttgtcaaaggaggaggtgtcaaa
ggaggaggcaccctcgacagtcgcggttctgtgtggtggggatccgaacatgctcaggat
aaggagagtcccaccgcaatgcatttcaacaactgtaatggtctaaggatgtataatctc
caacacttgaacagtcctcggaaccacataggtctaaccggctcaaagaacatcagcatc
tcgggacttaatttgactgcacctggtgatagtcccaatacggatggtatagatatatcg
aggtgtataggagtcgacatacgtgactcagtgatatccaccggagatgactgcattgcc
attaattctggttcctcttatatcaacataaccggccttttttgcggtcccggtcatggc
attagcgtgggaagccttgggagaaatggagagtttgcaagcgttgaagaagtgagagta
aagaactgcactttgtcaaacacaatgaacggtgtccgaatcaagacataccagaacgga
ttaggatatgcacggaaaatctcatttgaggatataaggatggtggattcaaaaaacccc
attatcatcgagcagaattacctgaaccggggcaaaatcgaagaagtaagctttgagaat
agtaactatcaaaaccgtggtggtaaaaatcgtttttacaagactgagtctggtaatgga
agaggcgtgagagtgagcgatgttcgttacagtagaatctacggctcatctgcgagcgat
gatgccgtcacgtttaactgcaatgcggacttgggatgtgaagatattgtgatggaccat
gtggatattgtttcagcgaaagcaggtcacgcggtgtcggcttcttgcaagaatgttcgt
gggagttattttagttcacctgttagttgtattaaaaagcattag
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