Brassica napus (rape): 106399070
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Entry
106399070 CDS
T04128
Name
(RefSeq) exopolygalacturonase clone GBGA483-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106399070
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
106399070
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Beta_helix
End_N_terminal
FAM176
NosD
PI3K_1B_p101
Motif
Other DBs
NCBI-GeneID:
106399070
NCBI-ProteinID:
XP_022558615
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Position
C5:53165087..53167330
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AA seq
507 aa
AA seq
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MVGLRLKALFFVLLVVMAISIANAAKDLKEQDVGVQRNLHEDDKGDKKDAKGEKGDKKDD
KKEDKEESVGSKVAKKVKGAAASVASAASNASAASAASAASAASAASGKIKGAVAPIGDK
LGLKGPSGPSIDVKASGAKGDGKTDDTAAFMAVWKKAIEATTPTTITVPKGDYLVEELLL
EGPSKSPITFEMHGNLKAPSAVTTRKPHSGWVNFRKLKDFNLIGNGAIFDGQGSVAWKVN
DCKQTGKCNNLPINIRLTQLDNSRISGITSTNSKLFHMNIHQCTNVTLQDVHIDAPPESL
NTDGIHVGKSVGVTIRGSKIKTGDDCISIGGGTENLLVEGVECGPGHGLSIGSLGKYPNE
EPVKGITIRKCIVKHTDNGVRIKTWPGSPPGLVSGALFEDITMDNVSLPILVDQVYCPHG
KCKSGPSKVQLENLSFKNIRGTSSTKIAVQLNCSPGCPCKNVALADINLVSTGKEGAAVS
ACSNVKPTVTGKMIPAACTEECKPDKK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggtgggcttgcgacttaaggcgttgttttttgtactactagtggttatggccatctca
atagcaaacgctgccaaggatctcaaagaacaagatgttggagtccaaagaaacttacat
gaagacgacaaaggtgataaaaaagatgctaaaggtgagaaaggtgataaaaaagatgat
aagaaagaagataaagaagaatcagttggttctaaagtagccaaaaaagtcaaaggagct
gctgcatctgttgcatcagctgcatccaatgcatctgctgcctcagctgcatctgccgct
tctgctgcctctgctgcatcaggtaaaatcaaaggagctgttgcacctattggtgataag
ttgggactcaaaggcccaagcggtccatcaattgatgttaaagcatctggagctaaagga
gacggcaaaaccgatgacactgcggcatttatggcagtatggaaaaaagctattgaagca
acaacaccaacaacgattacagtgccaaagggtgactacttggtggaagaattactactc
gaaggtccaagcaaaagtcctatcactttcgaaatgcatggcaatcttaaggctccatct
gctgtcaccacccgaaaaccacatagtggatgggttaatttcagaaaactcaaggatttc
aatttgattggaaacggagccatttttgacggtcaaggctcagtggcttggaaggtcaat
gactgcaaacagaccggcaaatgcaacaatctccccatcaacatccgacttacgcaactc
gataactcgagaattagcggcataacatcaacaaacagcaagctattccacatgaacatc
catcaatgcaccaacgtaactcttcaagatgttcatattgacgcacctcctgagagtctc
aacaccgatggtatccacgtcggaaagtccgtaggtgtcaccataagagggtcaaagatc
aaaaccggagatgactgcatttccattggaggcggtactgaaaatttacttgtggagggc
gtagaatgtggaccaggacacggtctttccatcggaagtcttggaaagtacccaaatgag
gaaccagtgaaaggaatcaccattcgtaaatgcatcgtcaagcataccgataatggtgtt
cgtatcaaaacatggcctggatctccccctggtctcgtctccggcgctctctttgaagat
atcaccatggataatgttagcttgcccattctcgtcgaccaagtgtactgccctcatggc
aaatgcaaatcagggccatcaaaggtgcagttggagaacctgagcttcaagaacattagg
ggcacatcatcaacaaagattgctgtgcaattaaactgcagcccaggctgtccttgcaag
aatgttgctttggctgacataaacttggtcagcactggtaaagagggagcagctgtctcg
gcatgttctaacgtcaagcctactgtcaccgggaaaatgattccagcggcttgcaccgaa
gaatgtaaaccggataaaaagtaa
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