Brassica napus (rape): 106401847
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Entry
106401847 CDS
T04128
Name
(RefSeq) serine hydroxymethyltransferase 2, mitochondrial
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
bna
Brassica napus (rape)
Pathway
bna00260
Glycine, serine and threonine metabolism
bna00460
Cyanoamino acid metabolism
bna00630
Glyoxylate and dicarboxylate metabolism
bna00670
One carbon pool by folate
bna01100
Metabolic pathways
bna01110
Biosynthesis of secondary metabolites
bna01200
Carbon metabolism
bna01230
Biosynthesis of amino acids
bna01240
Biosynthesis of cofactors
Module
bna_M00532
Photorespiration
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
106401847
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
106401847
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
106401847
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
106401847
Enzymes [BR:
bna01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
106401847
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Gene cluster
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Motif
Pfam:
SHMT
Beta_elim_lyase
DUF2521
Motif
Other DBs
NCBI-GeneID:
106401847
NCBI-ProteinID:
XP_013697907
UniProt:
A0A078IGW6
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Position
C6:35908317..35911915
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AA seq
509 aa
AA seq
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MSLALRRLSSSLKKPIFSNGGSFRSMSSTPASERSRSTWISQLNAPLEEIDPEIADIIEL
EKARQWKGFELIPSENFTSASVMEAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKR
ALEAFQLDPYKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKK
ISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAGASAYARLYDYARIRKVCD
KQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQ
GKEVMYDYEDRINAAVFPGLQGGPHNHTITGLAVALKQVKTPEYKAYQDQVLRNCSKFAE
TLLSKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGG
IRMGTPALTSRGFIEEDFAKVAEYFDLAVKIALKIKAESQGTKLKDFVATMQSNEKLQSE
MAKLREMVEEYAKQFPTIGFEKDTMRYKE
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttggctcttcgcagactctcctcttccctcaagaagcccatcttctccaatggc
ggttccttccgttctatgtcgtctacgccagcctcggagagatctcgttccacttggata
agccaactcaatgcacctcttgaagaaatcgatcctgaaatcgcagatatcatcgagctc
gagaaggctaggcaatggaagggatttgagcttataccctcagagaacttcacctctgcc
tcggttatggaagctgttggctctgttatgactaacaagtatagtgaaggttaccctggt
gctagatactatggaggcaatgagtacattgacatggctgagtcattatgtcaaaaacgc
gcacttgaagcttttcaattagatccttacaaatggggagtcaatgtgcagtctttatca
ggatcaccagctaacttccaagtttacaccgcacttctgaaacctcacgaaagaatcatg
gcacttgacttgcctcacggtggccatctttctcatggttatcagactgacacgaagaaa
atatctgctgtatccatcttttttgagacaatgccatacagattggatgagaacactggc
tacattgattatgatcagctagaaaagagtgccgtgcttttcagaccgaaacttattgtt
gcgggtgcaagtgcttatgctcgtctatatgactatgcacgtattcgaaaggtctgtgac
aagcaaaaggcggttatgcttgctgacatggctcatattagtgggttggtggctgctggt
gtgattccttctccttttgagtatgcagatgttgttaccactacaactcacaaatcgctt
cgtggtcctagaggggctatgatattctttaggaaggggttgaaagaggttaacaaacaa
ggaaaagaggtcatgtatgactatgaagacagaattaacgcagctgtttttcctggactg
caaggtggtccacataatcacactataacaggtctagcagttgctctgaagcaggtgaaa
acaccagagtataaggcctaccaggatcaagttctccgtaattgttcaaagttcgcagag
actttgctatcaaaaggatatgacttagtgtctggaggcactgagaatcacttagttttg
gtgaatttgaaaaataagggaatagatggatcaagagtggaaaaagtattagaatcagta
catattgcagcaaacaagaacactgttcccggtgatgtttctgctatggttcctggtggc
atccgtatgggaacaccagctctgacatcaagaggattcattgaggaagattttgcaaaa
gtggctgaatactttgatttagccgtcaagatagccttgaagatcaaggcagagtctcaa
ggaacgaagctgaaggactttgtagcaacaatgcaatcaaatgagaagttacagtcagag
atggcaaagctgcgtgagatggttgaagaatatgctaaacagttcccaaccattgggttc
gagaaagacacgatgagatacaaagagtag
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