Brassica napus (rape): 106415742
Help
Entry
106415742 CDS
T04128
Name
(RefSeq) ubiquitin C-terminal hydrolase 13 isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
bna
Brassica napus (rape)
Pathway
bna03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
106415742
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
bna01002
]
106415742
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106415742
Enzymes [BR:
bna01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
106415742
Peptidases and inhibitors [BR:
bna01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
106415742
Ubiquitin system [BR:
bna04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
106415742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
UCH_1
MATH
ubiquitin
RA
Malt_amylase_C
Motif
Other DBs
NCBI-GeneID:
106415742
NCBI-ProteinID:
XP_013711963
LinkDB
All DBs
Position
A5:25143596..25152863
Genome browser
AA seq
1116 aa
AA seq
DB search
MVTPTPLDQQEDDEMLVPHSDVVEGPQPMEVAQPEAAAAATAVESLPVEEPPTMKYTWTI
PGFTRLNTRKHYSDVFVVGGYKWRVLIFPKGNNVDNLSMYLDVADAANLPYGWSRFSQFG
LAIVNQINSSYSIRKESQHQFNSRESDWGFTSFMPLSELYDPTRGYLLNDTVVIEAEVAV
RKVLDYWSYDSKKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTAS
IPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTV
VEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCKDVYESFDKYVEVERLEG
DNKYHAEGHDLQDAKKGVLFIEFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLELDLDR
DNRKYLSPDADKSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDV
KRALEEQYGGEEELPQNNPGFNNPPFKFTKYSNAYMLVYIRKSDEDKIICNVDEKDIAEH
LRVRLKKEQEEKEEKRKYKAQAHLFTTIKVTRDEDITEQIGKSIYFDLVDHEKVKSFRIQ
KQTPFQLFKEEVAKEFGVPVELQRFWIWAKRQNHTYRPNRPLLPHEELQTVELLREACNK
TNNAELKLFLEIERGPEERPIPPPDKSSEDILLFFKLYDPENAILRYVGRLMVKNSSKPM
DIVGQLNQMAGFAPDEEIELFEEIKFEPCVMCEQLDKKTSFRLSQIEDGDIICFQKPLSI
QENECPYPDVPSFLAYVQNREVVRFRTLEKTKEDEFTMELSKLHTYDDVVQRLAEKLGLD
DPSKIRLTSHNCYSQQPKPQPIKYRGVDRLSDMLAHYNQTSDILYYEVLDIPLPELQGLK
SLKVAFHHATKDEVVIHNIRLPKQSNVGDVINELKTKVELSHPDAELRLLEVFFHKIYKI
FSSTERIENINDQYWTLRAEEIPEEEKNIGPSDRLVHVYHFTKEAGQNQAQVQNFGEPFF
LVIHEGETLEEIKSRIQKKLRVPDEDFAKWKFASFSMGRPDYLQDTDVVYDRFQRKDVYG
AWEQYLGLEHVDNAPKRAYAANQNRHAYEKPVRIYN
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atggtgactccaacgccgcttgatcagcaagaggacgacgaaatgctcgttccgcattct
gatgtggtcgagggacctcagcctatggaagttgctcaacctgaggctgctgctgctgct
accgctgtggagagtcttccagtggaggagcctcccactatgaagtacacgtggactatc
ccaggtttcactaggctgaacaccaggaagcattactctgatgtatttgttgttggaggg
tataaatggagagtgttgatatttcccaaaggaaacaatgttgacaatttgtccatgtac
ttggatgttgctgacgctgcgaatttgccctacgggtggagcagattttcgcagttcggc
ctggctatagttaatcaaatcaacagcagctattccatcagaaaagagagccagcatcaa
ttcaattcaagagaaagcgactgggggtttacatcattcatgcctctcagcgagctttat
gatcccactcgtggatatttattgaatgatactgttgtaattgaagctgaagttgctgtg
cggaaggtccttgattactggtcatatgactcaaaaaaagagactggttttgttggacta
aagaaccaaggtgctacctgttacatgaattctctcctgcagacgttataccacatacct
tacttcagaaaggctgtttaccacatgccaacaactgagaatgatgcacctacggcgagt
atcccattggcgctccagagtttgttttacaagcttcaatataatgacaccagtgtagcg
acaaaggagctgaccaagtcgtttggttgggatacatatgattcgttcatgcaacatgat
gttcaagaactcaaccgagttctctgtgaaaagcttgaggacaaaatgaagggaactgtt
gtggagggaacaatacagaagttattcgagggtcaccacatgaattacatagagtgcatc
aatgtagattacaaatctacacggaaagaatcattctatgacctccagcttgatgttaaa
ggctgcaaagatgtatatgaatcttttgacaagtatgttgaagttgaacgccttgaaggt
gacaacaaataccatgcagaaggacatgatttacaggatgcaaaaaagggtgttctgttt
atagaatttccacccgtacttcaacttcagctcaagaggtttgaatatgattttatgcga
gacacaatggtgaagataaatgatcgatatgagtttcctcttgaactggatcttgacaga
gataatagaaagtatttatcccctgatgctgacaagagtgtccgtaatctatacacactc
cacagtgtcttagttcatagtggtggagtgcatggaggccactattatgcttttattagg
ccaactctctcagaccagtggtataaatttgatgatgaacgggtgacgaaggaagatgtg
aaaagagcgctggaagagcaatatggtggtgaagaagagttgccgcagaataatcctggt
ttcaataacccaccttttaaattcacaaaatactcgaacgcgtacatgcttgtttatatt
cggaaaagcgacgaggataaaataatctgcaacgttgatgaaaaagacattgcagaacat
ttacgggtgaggctgaaaaaagaacaagaagaaaaggaagagaaaagaaaatacaaggct
caagctcaccttttcacgacaatcaaggtcacaagagatgaagacattactgagcaaatt
ggaaagagtatatattttgatcttgttgatcatgaaaaagtcaagagtttccgaattcag
aaacagaccccctttcaactatttaaggaagaggtggccaaagaatttggtgtcccggtt
gagctacagcggttctggatttgggcaaagcggcagaaccatacttatcggcccaaccgc
cccctattacctcatgaagaattacagacggttgaacttttaagagaggcatgtaacaag
acaaacaatgctgaactaaagctgtttctggaaatagagcgcggaccggaggagcgtcct
attcctcccccagacaagtcatctgaagatattctccttttctttaagctctatgaccct
gagaatgcaattctaagatatgttggtaggctcatggtgaaaaattccagtaagcccatg
gacatagtagggcaattgaatcaaatggctggctttgctcctgatgaggaaatagaactt
tttgaggaaataaagtttgaaccttgtgtcatgtgcgaacaactggataagaagacttct
ttcagactatctcaaattgaagatggagatatcatatgctttcagaaacctctttctatc
caggagaatgaatgtccttacccggatgtaccatcgtttttggcgtatgtacagaatcga
gaggtggtgcgctttcgtactctcgaaaaaacaaaagaagacgagttcactatggagttg
tcaaagctgcacacgtatgatgatgttgtccaaagattagctgagaagcttggccttgat
gatccatcgaaaattaggcttacttctcacaattgctactcccagcaacccaagccccag
cctattaaataccgtggagtagaccgtctttcagatatgttagctcactataatcagacg
tctgacattttgtattatgaagttctggacattcctcttccagaattgcaaggtcttaag
agtctaaaagtagctttccatcatgccacaaaggacgaggtggtaatccacaatatcaga
cttcctaaacagagtaatgtgggagatgttattaacgaacttaaaacaaaggtggaattg
tcgcatcctgatgcagaactgaggttgctggaggtctttttccacaagatctacaagatc
ttttcatctacggaaagaattgagaatatcaatgaccagtactggactttacgagcagag
gagatacctgaggaagagaagaatattggtcccagtgatcgattagtccatgtttaccat
tttactaaagaggccggacaaaatcaagcgcaagtacaaaatttcggcgagccgttcttt
ctggtaatccacgaaggtgaaactttagaagaaatcaagtcccgtatccaaaagaagctc
cgtgttccagatgaggacttcgccaagtggaagtttgcttctttctcaatgggacgtccg
gactacttgcaggacacagatgtcgtttatgatcgctttcagagaaaggatgtatatggt
gcctgggagcagtatcttgggttggagcacgttgataatgctcctaaaagggcttatgct
gcaaatcagaaccgacacgcatacgagaagccggtgagaatatacaattag
DBGET
integrated database retrieval system
