Brassica napus (rape): 106439952
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Entry
106439952 CDS
T04128
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit D
KO
K07466
replication factor A1
Organism
bna
Brassica napus (rape)
Pathway
bna03030
DNA replication
bna03420
Nucleotide excision repair
bna03430
Mismatch repair
bna03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106439952
03420 Nucleotide excision repair
106439952
03430 Mismatch repair
106439952
03440 Homologous recombination
106439952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bna03000
]
106439952
03032 DNA replication proteins [BR:
bna03032
]
106439952
03400 DNA repair and recombination proteins [BR:
bna03400
]
106439952
Transcription factors [BR:
bna03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
106439952
DNA replication proteins [BR:
bna03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
106439952
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
106439952
MMR (mismatch excision repair)
106439952
DSBR (double strand breaks repair)
HR (homologous recombination)
106439952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
106439952
NCBI-ProteinID:
XP_013736968
LinkDB
All DBs
Position
A3:complement(21748435..21751266)
Genome browser
AA seq
609 aa
AA seq
DB search
MQTSVTPDAISAVLSNPSFDSSSSDRSEIVVQVVDLKPIGNRYTFSANDGKTRVKAMFTA
SLTPEIISGNIQNLGLIRLLDFTVNDISSNSTKYFLVTKCESVASVLDSEVNLEGGEAKR
QKLDHSPKQEFVAKSASQIITEQRGNAAPAARMSMTRRVHPLVSLNPYQGSWTIKVRVTN
KGVMRNYKNARGEGCVFNVELTDEEGTQIQAAMFNDAARKFYDRFQLGKVYYISRGSLKL
ANKQFKTVQNDYEMTLNENSEVEEASDEEMFVPETKFNFVPIEELGMYVNQKELIDLIGV
VQSVSPTMSIRRRTDNEMIPKRDITLADESKKTVVVSLWNNLATGIGQELLDMADKSPVI
AIKSLKVGDFQGVSLSTISRSNVVINPESPEAKKLKSWYDSEGKETSMSSIGSGMSPSAK
NGSWSMYADRVPLSQITSNLSLGEDKPVFFSTRGYISFIKPDQTMWYQACKTCSKKVTEA
MDSGYWCESCQKKDEECSLRYIMVVKVSDSTGEAWFSSFNDEAEKIIGCSADELNKLRSE
AGEVNEFQTKLKEATWSSHVFRISVTQNEYNGEKRQRITVKAVAPVDFAAESRLLLQDIS
KKNTSAASH
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgcagacttcagtgaccccagatgctatctccgccgtgttgtcaaacccatctttcgat
tcgtcgtcttcggatcgatctgagatcgtcgttcaagtcgttgatctcaagcctatcggc
aatcgatacacattcagtgctaatgatgggaagacgagagtcaaagcaatgtttacagct
tcgctaacgcctgagatcatttctgggaatatccagaatctgggtctgattcgtctcctt
gatttcactgttaacgacatctcaagcaattcaaccaaatactttcttgtgacaaaatgt
gagtctgttgcttccgtgcttgattctgaggttaacttggagggtggtgaggccaagagg
cagaagctagatcactctcccaagcaagagtttgttgccaaatcagcttctcagataatc
actgaacagaggggaaatgctgcaccagctgcgagaatgtccatgactagaagagttcac
ccacttgtgtccttgaatccctatcaaggaagctggaccatcaaagtccgtgtcactaac
aagggagtcatgagaaactacaaaaacgctagaggtgaaggatgtgtcttcaatgtcgaa
ctaactgatgaagaaggaacacagattcaagccgcgatgttcaatgatgctgcacggaag
ttttatgacaggttccagctgggaaaggtgtattatatatcaaggggatcacttaagctt
gctaacaagcagttcaagacagttcagaatgattatgagatgacactgaatgaaaattca
gaggtggaagaagctagtgacgaggaaatgtttgttcctgagactaaattcaactttgta
cccattgaagagttgggtatgtatgtgaatcagaaggagcttattgatcttattggagtt
gttcaaagtgtttcccctaccatgagtattaggaggagaactgacaatgagatgatacca
aagagggatataactttggctgatgagtcaaagaagactgttgtggtgtcactgtggaac
aacttggcaaccggcataggtcaagaactgctagacatggctgataagtctcctgtgatt
gcaatcaagtctctcaaagttggagactttcaaggtgtgtcgttgtccaccatcagcaga
agcaatgtagtgataaatcctgaatcaccagaagccaaaaagcttaaatcttggtatgat
tccgaaggcaaggaaacatccatgtcttccattggatcagggatgagcccatctgccaag
aatggatcttggtctatgtatgctgatcgagtccctctctctcaaatcacaagcaatcta
tctctaggcgaggacaagcctgtgtttttcagcaccaggggttacataagcttcatcaaa
ccagaccagacaatgtggtatcaagcttgtaagacatgtagcaagaaagtaactgaagca
atggactctggttactggtgtgaaagttgccagaaaaaagatgaagaatgcagtttaagg
tacataatggtggtgaaagtctctgactcaacaggagaagcttggttttcctcattcaac
gacgaagcagagaagattattggatgttcagctgatgagctcaacaaactaagatcagag
gcaggtgaagtgaatgaattccagacaaagctgaaagaagcaacatggtcctctcatgtc
ttcaggatcagtgtcactcagaacgagtataacggtgagaagaggcagagaataactgtt
aaagcggtagctcctgttgattttgctgctgagtcaagattattgctccaagacatctcc
aagaagaacacatcagcagcttctcattag
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