Bosea sp. PAMC 26642: AXW83_17900
Help
Entry
AXW83_17900 CDS
T04264
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bop
Bosea sp. PAMC 26642
Pathway
bop03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AXW83_17900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bop03400
]
AXW83_17900
Enzymes [BR:
bop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AXW83_17900
DNA repair and recombination proteins [BR:
bop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AXW83_17900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AMJ61921
UniProt:
A0A126P200
LinkDB
All DBs
Position
3722823..3725375
Genome browser
AA seq
850 aa
AA seq
DB search
MATLDLYRAKRDFSRTKEPKGGKGRKTAAEAGGVFIIHKHAARRLHYDLRLEHDGVLWSW
AVTRGPSLDPDEKRLAVHVEDHPLEYGAFEGTIPEGEYGAGSVIIWDEGRWVPEGDPAFG
LEKGHLSFILQGHKLAGQWHLVRLKPRRGEKRDNWLLIKVDDAAARSDEDILETAPDSVK
SGSSVEAVGRGEAPDAKVWAKTKRPGQKRPALDPAPPVKAANSRKASHKAPEGELLPSFV
PPCLATLQEKAPAGEAWLHEVKFDGYRMQARVSDGKTRLLTRSGLDWTDRFGATLEQALS
RLPCDSAIIDGEVVALGENSVSSFSALQDALSEARTEYLVYFAFDLLHLDGEDLRGEPLL
ARKERLEALLSAIPAKAPLRYSEHFREPGQTMLRHACRMGLEGVISKRADAPYRSGRGRD
WVKSKCSQRQEFVIAGYVPSKGSGRELGSILAAYHEDGILRPAGRVGTGFTRKSAAVLKG
KLDALKTVSSSFEGAAGREKGIVWVEPELVAEVEFGAWTASKTLRHASFIGLREDKPADE
VVPETPAEPVGETPEPKKPAVKPRRTLHAETTVVLSNPDKPLWPDIGLSKQDLLDYYATV
WPLMQPFVVDRPLSLLRAPNGIEGHSFFQKHGSPGMHKAISTRKDRDGEDLLFIRDFDGL
AALVQLGTVEVHVWGATMDAIETPDQIIFDLDPDTGVSVEAVRDAARSIRERLRELGFES
LLKLSGGKGFHVVVPLKPKADWARVKGFANTFAKAMEQAEPKRYTATLSKKARRGRIFID
YLRNGRGATAIAPYSTRARKGGAVSMPLPWSDLDEAVPDAFKAQDLLKAGAPEPVWNDFF
AMAKALTGAG
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgctcgatctctatcgcgccaagcgggacttctcacggacgaaggaacccaag
ggcggcaagggccgcaagacggctgccgaggcgggcggcgttttcatcattcataagcac
gccgcgcgccgcctgcattacgacctcaggctggagcatgacggcgtgctctggtcctgg
gccgtgacgcgcggcccaagcctcgaccccgacgaaaagcgtcttgccgtccatgtcgag
gatcacccgctggaatacggcgccttcgaaggcacgatccccgagggcgagtatggcgcg
ggctccgtaatcatctgggacgagggtcgctgggtgccggagggcgaccccgccttcggc
ctcgaaaagggccatctctccttcatccttcagggccacaagcttgccggccaatggcac
ctcgtccggctcaagccacgtcgcggcgagaagcgcgacaactggctgctgatcaaggtc
gacgacgccgcagcccgcagcgacgaggacatcctcgaaaccgcccccgactcggtcaaa
tccggttcgagcgtcgaggccgtcggacgcggcgaggcccccgatgccaaggtctgggcg
aagacgaagcgcccaggccaaaagcgaccggctctcgaccccgctccgcccgtcaaggcc
gcgaactccaggaaggccagccataaagcccccgaaggcgagcttttgccgagcttcgtc
ccgccctgcctcgcgacgcttcaggagaaggcgcctgcgggcgaagcctggctgcacgag
gtcaagttcgacggctatcgaatgcaggcccgtgtctctgacggcaagacccgcctgctg
acgcgcagcgggctcgactggacagatcgtttcggcgccaccctcgaacaggccctgtcc
cgcctgccatgcgatagcgcgataatcgacggagaggtcgtggcgctcggcgaaaacagc
gtttcgtccttttcggcgctgcaggatgccctctccgaagcccgcaccgaatacctcgtc
tacttcgccttcgatctgcttcatctcgacggcgaggatcttcgcggcgagcctctgctc
gcacgcaaggaacggcttgaggcgctgctgagcgctattccggccaaagcccccctgcgc
tacagcgaacattttcgcgagcccggtcagaccatgctgcgccatgcctgccgtatgggg
ctggaaggcgtcatctccaagcgcgccgatgcgccctatcgcagcggccgcggccgcgac
tgggtcaagtcgaaatgcagccagcggcaggagttcgtcattgccggctacgtcccctcg
aaaggctcgggccgcgaacttggttcaatcctcgccgcttaccatgaggacggcatcctg
cgacccgccggccgcgtcggcaccggcttcacccgcaaatccgcggctgtgctcaagggc
aagctcgacgcgctgaaaacggtgagctcttccttcgagggcgctgccggccgggaaaag
ggcatcgtctgggtcgagccggaactcgtggccgaggtcgagttcggcgcctggaccgcc
tcgaagaccttgcgccacgcctccttcatcggcctgagagaggataagccggcagatgag
gttgttccggaaacaccggccgagcctgtaggcgaaactcccgagccgaaaaagcccgct
gtgaaaccacgccggacattgcacgccgagacgacggtggtcctgtccaaccccgataaa
ccgctctggcccgatatcggcctcagcaagcaggacctgctcgactactacgccaccgtc
tggccgctgatgcagcccttcgtcgtcgaccggccgctgagcctgctgcgtgcgcccaac
ggcatcgagggccacagcttcttccagaagcatggctcgccggggatgcacaaggcaatc
tccacccgaaaagaccgtgacggcgaggatctgctcttcatccgtgatttcgacggtctt
gccgcgctggtccagctcggaacggtggaagtccatgtctggggcgcgacgatggacgcc
attgagacgcccgaccagatcatcttcgatctcgatcccgacaccggcgtctcggtcgag
gcagtgcgcgacgcagcccgcagcatccgcgagcgcctgcgcgaactcggcttcgagagc
ttgctcaagctgtcgggcggtaagggttttcacgttgtcgtgcccttgaagcccaaagcc
gactgggcccgggtcaaaggtttcgccaacaccttcgccaaggcgatggagcaggccgag
ccgaagcgttacactgcgaccctgtcgaaaaaagcgcggcgcggccgcatcttcatcgac
tatctccgcaatggccgcggggcgaccgcgatcgcgccctactcgacccgcgcccgcaag
ggtggcgccgtctcgatgccgctgccctggagcgatctcgacgaggcggtccccgacgca
ttcaaggcgcaggatctcctcaaagcaggcgcgcccgagcctgtctggaacgatttcttc
gcgatggcaaaggcactcacgggcgcaggctag
DBGET
integrated database retrieval system