Bipolaris oryzae: COCMIDRAFT_22714
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Entry
COCMIDRAFT_22714 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
bor
Bipolaris oryzae
Pathway
bor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCMIDRAFT_22714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_22714
Enzymes [BR:
bor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
COCMIDRAFT_22714
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
COCMIDRAFT_22714
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
COCMIDRAFT_22714
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
DUF3921
Motif
Other DBs
NCBI-GeneID:
19120309
NCBI-ProteinID:
XP_007683745
JGI:
Cocmi1_22714
UniProt:
W7A0Z7
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MAEYSVYPRGTGQSFFPRHTQNTRNLPTRARSPTTSARIPFSNPDTPSPARSPGRQSSPQ
QFGMFNQGHGHQGHNVMMNGRTGQQNYAAMQMGLGKPFQHNQHHQHQHQHHQQHQDLTGN
SHVGQYNHQHNISSGGMSNVQPHFTPGHLQNGTPNSVHSGLSKPQTEHWQEQLKLHQTAR
EMTQAHSHARIHPSVSKSVVAGTTNGMQKEADKEERNRPAAQRAEDAKDQHIWTILDFGG
QNLKVITPALFAYTFLTKLYLNSNKLTYVHQKIGQLRNLTHLDLSLNNLQYLPPEIGMLV
NLKQLLLFDNHIENLPYELGSLYQLEVLGIEGNPIPDDLKQIIMEQGTGELIKHFRENAP
GPEAPPERDWIVLDEIQDTSQETVSALSYNILCDKYCTQSQYGYTPSSALEWESRRELIL
AELRERDADIVCLQEIDQESFNEFFRAALAHNDYKGVFWPKSRARTMAEREAKLVDGCAI
FYKNSKYILLDKQLIDFANTAINRPDMKGEHDIFNRVMPRDDIGVVAFLENRATGSRFIV
GNVHVFWNPAFQDVKLVQVAILMEGITKFATQWTKHPPCTNKVVYQFTNGDNDEVAEPDP
TQEPGPSKVYTDPADIPVILCGDFNSLPSSGVYDLITNGNISNVHADLGSRKYGNFTRDG
ISHPFSLKSSYASIGELAFTNYVPHFQGVLDYIWYSTNTLQVVGLLGDIDKSYLQRVPGF
PNYHFPSDHVALYAQYIVKSRKEAKKVSEVDFGPSRDRRN
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggccgagtactcggtctaccccaggggaaccggccaatccttttttccacgacacact
cagaacacacgaaaccttcctacccgcgcgcgatcccccacaactagcgcccgcatcccc
ttcagtaaccccgataccccttcgccagctcgatctcctgggcgccaatcgtctccgcag
caattcggtatgttcaaccagggccatgggcatcagggccacaacgttatgatgaacggg
cggacagggcagcaaaactatgctgccatgcaaatgggccttggcaagccctttcagcac
aatcagcaccaccagcatcagcatcaacatcaccaacaacatcaagatcttactgggaac
agccatgtcggacaatacaaccaccagcacaacatctcaagcgggggcatgtccaacgtt
cagccccacttcacccccggtcacctccaaaatggtaccccgaacagcgttcacagcggt
ctcagcaagccacaaactgagcactggcaagagcaattgaagctgcatcaaacagcgcgt
gaaatgacacaggcccactcgcatgccaggatccacccgagtgtcagcaagagcgtcgta
gccggaacaaccaatgggatgcagaaagaggcggacaaggaggagcgcaatagacctgct
gcccagcgagcagaagacgcaaaggaccagcatatatggaccatcctcgactttggcggc
cagaacctcaaagtcattacccccgcgctattcgcatacacctttctcacgaagctctac
ctcaattcgaacaagctcacttatgtgcaccaaaagattggacaattacggaaccttaca
catctcgacctttcactcaacaacctgcaataccttcccccagagattggcatgcttgta
aacttgaagcagctgttgctattcgacaaccacatcgagaatctgccgtatgaattggga
tccttgtatcaattggaagtgcttggtattgagggtaacccgattccggatgatctgaag
cagattatcatggagcagggtaccggggaactcatcaagcacttccgcgaaaatgcaccc
ggaccagaggcaccacccgagcgagactggattgtcctcgacgagatccaggatacctct
caagaaactgtgagtgcgctgagctacaacattctgtgcgacaagtactgcacgcaatca
caatacggttacacgcccagttcagcgcttgaatgggaaagccgcagggaactcatcttg
gccgaactgcgagagcgcgatgcggacattgtctgcttgcaggagattgatcaagagagc
ttcaatgaatttttccgagcagcgcttgcgcacaacgactataagggagtcttttggcca
aagtccagagcacgcaccatggccgagagggaagctaaacttgttgatggctgtgccatc
ttctacaagaatagcaaatacatcctgcttgacaagcaattgatcgatttcgctaacacg
gccattaaccgacccgacatgaagggcgagcacgacattttcaaccgtgtcatgccacga
gacgacattggagtggtcgcattcctcgaaaaccgagctactgggtcaagattcattgtt
ggaaatgtacacgtgttctggaaccctgcattccaagacgtcaagctcgtgcaagttgcc
attttgatggagggaatcaccaagttcgcgacacaatggacgaagcacccaccctgcaca
aacaaggtggtgtaccagttcaccaatggtgacaatgacgaagtagcggagccggatccg
acccaagagccaggaccatccaaggtgtataccgaccccgctgacattccagtaatcctg
tgcggtgactttaattcactgccgtcttctggtgtctacgacctcattacgaacggcaac
atttcgaatgtgcacgctgatttgggaagccggaagtatggtaacttcacacgagacgga
atatcccaccccttcagcctcaagtctagctacgcatcgattggcgagctggcgtttaca
aactatgttccacacttccaaggagtactggactatatttggtactcgacaaacaccctg
caagtggtcggcctgcttggcgacatcgacaagagctaccttcagcgggtgccaggcttc
ccgaactaccactttcccagtgaccacgtggctctatatgcacaatacattgtcaagagc
cggaaagaggcaaagaaggtgtctgaagtcgactttgggccgagtcgagatcggaggaat
tga
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integrated database retrieval system
