Bipolaris oryzae: COCMIDRAFT_40543
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Entry
COCMIDRAFT_40543 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
bor
Bipolaris oryzae
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_40543
03041 Spliceosome [BR:
bor03041
]
COCMIDRAFT_40543
03036 Chromosome and associated proteins [BR:
bor03036
]
COCMIDRAFT_40543
Enzymes [BR:
bor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCMIDRAFT_40543
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
COCMIDRAFT_40543
mRNA cycle factors
Common to processing body (P body) and stress granule
COCMIDRAFT_40543
Spliceosome [BR:
bor03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
COCMIDRAFT_40543
Chromosome and associated proteins [BR:
bor03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
COCMIDRAFT_40543
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Abhydrolase_3
BD-FAE
COesterase
ResIII
UTP25
IlvC
Motif
Other DBs
NCBI-GeneID:
19123896
NCBI-ProteinID:
XP_007692227
JGI:
Cocmi1_40543
UniProt:
W6ZC04
LinkDB
All DBs
Position
Unknown
AA seq
1107 aa
AA seq
DB search
MSNADPPKTVAGAATDRAEQLARDLARAKEAGWTNPIPFQYDTVVGGTPAADETRDAAPW
LSDAAVYQWDDEFGDVGEPNPELEKMLFQDEYLQRAGSAISALSFEVTVQGPTKINPVRN
FEDAGLHPIMLENVKLCQYGAPTPIQSYCIPAILTGNDVVAIAQTGSGKTAAFLVPILSK
LMGKARQLAAPRPNPARYNPLTDRVRAEPLVLIVCPTRELATQTFDLTRRLCYRTMLRPC
VVYGGAPTRNQREQLEMGCDILIATPGRLMDFMQNNNLLSLRRLKFTVIDEADELLSSGW
EEAMEKVFSGADVNSDADHTIVMLSATFSKAARRLAKEYMEEGFVRIKVGRVGSTHRNIK
QEIRFVEDDDKNKELFDLLFDGGPQRSLIFVNTKFKCDKVDDFLYNKGLPVTSIHSDRTQ
REREDALRSFRTGRCPILVATGVTARGLDVANVKHVINYDLPSSQHGGITEYVHRIGRTA
RIGNEGKATSFFNDGNQDIAEDLVKVLIESGQEVSDFLEQFKPQNPSAIEWHDGTDEESD
DGLGGGFGGEAGGFDISATFGNEAAAGFGSAGGFGGESFSADADDKVASCVDAHMEEVFC
PYPATRSALNLGSLDTPCFAYLRCTFWHSIAYFFRLPFHIQWRTALVQLPRFVPLSILHL
TSPKGPHPFLIALPSRKGHLIYAYTFVPPAPADADAESEQQRKETGEWHVPVVLDLHGGG
FIMGSPLEQAPYASMMSRELGAVVLSVSYRIGPFHQFPAAIHDAEDVLSAILDTSGTSEA
GKVLRQEVQRYYSMVRTNVLEGKNKKEPVLPHIQHATDMVLDPTHLAISGFSAGGNIALN
MAISIPPCPQMGMMESQTLGPADRDCMSPTLPANRRATILDDPFQSWPSLLPPPEAQPRL
LPLLLFYPSLDARLLPHERPRRPMPNALKPDDYHVEKPRQPGLFSILGPTYLPKKLRAHP
RASPGLNDPEHIQKNAAIFLVLPEKDSLAVQSDVWVDKMNSSNWTGPVRFGDGRAGDWDG
TTTATTTTTSGDGDGDGNGQSQEWCSNASHAKNGGLEIWHAPGCRHGWTQFPNTFVPEHE
ARERDAVFARAVRFVREKWERELALEC
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacgcagatccgcctaagactgttgctggcgctgctacagaccgcgcggagcag
ctggcaagggatcttgcccgtgccaaagaggctggatggaccaacccaatccccttccag
tatgacactgttgtcggcggcacgcctgctgcagacgagactcgcgacgctgctccctgg
ctgtcagatgccgccgtctatcagtgggacgatgagtttggcgatgttggtgagcccaat
cctgagcttgagaagatgctcttccaggatgaatatctgcagcgtgccggcagtgcgatc
agcgctctctcattcgaagtcactgttcaaggccctaccaagatcaaccctgttcgcaac
tttgaggatgccggtttgcacccgatcatgcttgagaatgtcaagttgtgccagtatggt
gctccaactcctatccagtcgtattgcatcccagccattctgactggcaacgacgtggtc
gctattgcgcagaccggatctggaaagacggctgcattcctggttcccatcctctcaaag
ctcatgggtaaggctcgtcagttggcagcacctcgacccaacccagcccgctacaaccct
cttacagaccgggtccgtgccgagcctctggtattgattgtgtgccctactcgcgagctt
gctactcagacattcgatctgactcgtcgcctgtgctaccgtacaatgttgcgcccttgt
gttgtgtatggcggtgctcccacgaggaatcagcgcgagcagctcgagatgggttgtgat
atcctcattgccactccaggacgcctcatggactttatgcagaacaacaatctcctttcg
ctccgccgcctcaagttcaccgtcatcgacgaagccgacgagttgctttcaagtggctgg
gaggaagccatggagaaagtgttttctggtgctgacgtcaactccgatgcggatcatacc
attgtcatgctctctgctaccttctccaaagccgctcgtaggcttgccaaggagtacatg
gaagaaggctttgttcgaatcaaagtaggaagggtcggtagcactcatcgcaacatcaag
caggagatccgcttcgttgaggacgatgataagaataaggaactcttcgatttgctcttc
gatggaggcccacagcgttccctcatcttcgtcaataccaagttcaaatgcgataaggtc
gacgactttctgtacaacaaaggcttgcccgtcacttcgatccactcagatcgcactcag
cgtgagcgcgaggatgctctccgttcgttccggactggacgttgtcctatcctggtcgcc
actggtgtcactgctcgtggtctcgatgtcgccaacgtcaagcatgtcattaactacgac
ctaccctcaagtcagcacggtggcattaccgagtacgttcatcgcattggccgcaccgcg
cgtattggcaacgaagggaaagccacctctttcttcaacgacggcaaccaggatattgcc
gaagatctggtcaaggttctcattgaatcgggacaggaggtgagcgacttccttgaacag
ttcaagcctcaaaacccgtcggccattgagtggcatgatggcactgacgaagagtctgac
gatggcctgggtggtggttttggcggagaagctggcggatttgacattagtgccactttt
ggtaacgaggcagctgctggctttggtagtgctgggggctttggtggtgagagcttctct
gcagatgctgacgacaaggttgcatcttgtgtcgatgcgcacatggaagaagtattttgc
ccgtatccagctaccagaagcgccctcaatctgggcagcttggacacgccatgcttcgcc
tatctacgttgtaccttctggcactcgatcgcgtattttttccggctcccattccacatc
caatggcggacggcgctcgtacaacttccgcgcttcgtgccgctgtccatcctgcacctg
acatcgccgaagggtccgcatccattcctgattgcgctgccgagccgcaaggggcatctc
atctacgcgtacacattcgtgccgccggcaccggcggatgcagatgcagagagtgagcag
cagcggaaagagacgggcgaatggcatgtaccggttgttttggacttacatggaggcggc
ttcattatgggatcgccgcttgaacaggcaccatatgcatcgatgatgtcgcgtgagctt
ggggccgtggtgctgagcgtatcgtatcgcatcggaccgttccaccagtttcccgcggcg
attcacgatgcagaggatgtgctatctgcaattctagatacgagcgggacatcagaggca
ggcaaggtcctacggcaagaggtgcagagatactactccatggtgcggacgaatgtgctg
gagggaaagaacaaaaaagagccagttcttccgcacatccagcatgccacggatatggtg
cttgatcccacgcatctggcgatatctggtttctcagccggaggcaacatagcgctcaac
atggcgatatcgattccaccctgtccacagatgggaatgatggaatcacaaacactcggg
cctgcggatcgcgattgcatgtcaccgacactcccggcaaaccgcagagcaacaattcta
gacgatccattccagtcatggccgtcgctcctcccaccacccgaagcgcaaccgcgactg
ctcccactgctactcttctacccgtctctcgacgcacggctgctgccgcacgaacgccca
cggaggcctatgccaaacgcgctcaaaccagacgactaccacgttgagaagccaagacaa
ccaggtctattctctatcttgggaccaacgtacctgcccaagaaactacgggcgcatcct
cgcgctagccccggtctcaacgacccagagcacatccagaagaacgcagctatttttctt
gtgctaccggagaaggactcgctagcggtgcagagcgatgtgtgggtggacaagatgaat
agtagcaactggacgggtcccgtacgctttggcgatggccgagcaggtgactgggacggc
accaccactgccactaccactaccacgagcggtgatggtgatggtgatggcaatggccaa
agccaagaatggtgctcgaatgcatcccatgccaagaatggcggactggagatttggcac
gctcccggttgcaggcatgggtggacgcagttccccaatacctttgtgccggagcatgag
gcgcgcgagcgtgatgcagtgtttgcacgggccgtgcggtttgtgagggagaagtgggag
agggagttggcactggaatgctag
DBGET
integrated database retrieval system
